RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ASPSCR1Q9BZE9 553 aa6.5□□□□□ -1.37
VPS29-212ENST00000621131 IL17RBQ9NRM6 502 aa6.5□□□□□ -1.37
VPS29-212ENST00000621131 CFDP1Q9UEE9 299 aaPredicted RBP6.5□□□□□ -1.37
VPS29-212ENST00000621131 SPEF1Q9Y4P9 236 aa6.5□□□□□ -1.37
VPS29-212ENST00000621131 DAPK1P53355 1430 aa6.5□□□□□ -1.37
VPS29-212ENST00000621131 MED1Q15648 1581 aaPredicted RBP6.49□□□□□ -1.37
VPS29-212ENST00000621131 PROP1O75360 226 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 C1RP00736 705 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 ELFN1P0C7U0 828 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 FXR1P51114 621 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS29-212ENST00000621131 MAPK10P53779 464 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 CCDC93Q567U6 631 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 ZNF384Q8TF68 577 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 TFAP2BQ92481 460 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 SCAMP4Q969E2 229 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 FBXL20Q96IG2 436 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 PGBD1Q96JS3 809 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 TRIB1Q96RU8 372 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 TIMP4Q99727 224 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 HEPHQ9BQS7 1158 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 KDM5BQ9UGL1 1544 aa6.49□□□□□ -1.37
VPS29-212ENST00000621131 PLEKHH2Q8IVE3 1493 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 ROCK1Q13464 1354 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 DHX57Q6P158 1386 aaKnown RBP6.48□□□□□ -1.37
VPS29-212ENST00000621131 LRRC14BA6NHZ5 514 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 CCND1P24385 295 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 GRIA3P42263 894 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 HSPA2P54652 639 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 NBPF8Q3BBV2 869 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 TAPT1Q6NXT6 567 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 SLC4A10Q6U841 1118 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 PRR18Q8N4B5 295 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 C3orf20Q8ND61 904 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 SNX19Q92543 992 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 UROC1Q96N76 676 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 BRD9Q9H8M2 597 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 ARPP21Q9UBL0 812 aaPredicted RBP6.48□□□□□ -1.37
VPS29-212ENST00000621131 ENTPD2Q9Y5L3 495 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 ARHGAP5Q13017 1502 aa6.48□□□□□ -1.37
VPS29-212ENST00000621131 GPATCH8Q9UKJ3 1502 aaKnown RBP6.48□□□□□ -1.37
VPS29-212ENST00000621131 SHANK2Q9UPX8 1470 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 LTBP4Q8N2S1 1624 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 ARAP3Q8WWN8 1544 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 WDR27A2RRH5 827 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 CCDC151A5D8V7 595 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 ADM5C9JUS6 153 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 TOR1BO14657 336 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 RBMXL2O75526 392 aaKnown RBP6.47□□□□□ -1.37
VPS29-212ENST00000621131 PPP3CBP16298 524 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 PDCP20941 246 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 PEG10Q86TG7 708 aaKnown RBP6.47□□□□□ -1.37
VPS29-212ENST00000621131 MIER2Q8N344 545 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 TOR1AIP2Q8NFQ8 470 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 MYCBPAPQ8TBZ2 947 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 SMOQ99835 787 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 PCDH12Q9NPG4 1184 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 RLIMQ9NVW2 624 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 ASB6Q9NWX5 421 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 ETAA1Q9NY74 926 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.47□□□□□ -1.37
VPS29-212ENST00000621131 ARHGEF5Q12774 1597 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 SPATA31A3Q5VYP0 1347 aa6.47□□□□□ -1.37
VPS29-212ENST00000621131 STRCQ7RTU9 1775 aa6.46□□□□□ -1.37
VPS29-212ENST00000621131 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.46□□□□□ -1.37
VPS29-212ENST00000621131 RIMS1Q86UR5 1692 aaKnown RBP6.46□□□□□ -1.37
VPS29-212ENST00000621131 VWC2LB2RUY7 222 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 GJB1P08034 283 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 SMARCA1P28370 1054 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 PRDX5P30044 214 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 HABP2Q14520 560 aaPredicted RBP6.46□□□□□ -1.38
VPS29-212ENST00000621131 TTC37Q6PGP7 1564 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 SLC30A10Q6XR72 485 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 GRASPQ7Z6J2 395 aaPredicted RBP6.46□□□□□ -1.38
VPS29-212ENST00000621131 FAM90A1Q86YD7 464 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 CFAP74Q9C0B2 1584 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 GPR35Q9HC97 309 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 MRPS18AQ9NVS2 196 aaKnown RBP6.46□□□□□ -1.38
VPS29-212ENST00000621131 POLHQ9Y253 713 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 FRMD4BQ9Y2L6 1034 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 PCDHA3Q9Y5H8 950 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 COL4A3BPQ9Y5P4 624 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 WDR7Q9Y4E6 1490 aa6.46□□□□□ -1.38
VPS29-212ENST00000621131 ANKRD30AQ9BXX3 1397 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 CDC42BPBQ9Y5S2 1711 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 NAIPQ13075 1403 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 YEATS2Q9ULM3 1422 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 POLRMTO00411 1230 aaKnown RBP6.45□□□□□ -1.38
VPS29-212ENST00000621131 FTH1P19P0C7X4 201 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 TSPY4P0CV99 314 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 TSPY10P0CW01 314 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 WT1P19544 449 aaPredicted RBP6.45□□□□□ -1.38
VPS29-212ENST00000621131 RECQLP46063 649 aaPredicted RBP6.45□□□□□ -1.38
VPS29-212ENST00000621131 NPTX2P47972 431 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 NXPH1P58417 271 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 PSMC1P62191 440 aaKnown RBP6.45□□□□□ -1.38
VPS29-212ENST00000621131 TXNRD1Q16881 649 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 PREPLQ4J6C6 727 aaPredicted RBP6.45□□□□□ -1.38
VPS29-212ENST00000621131 ZKSCAN2Q63HK3 967 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 C1orf43Q9BWL3 253 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 GNL3LQ9NVN8 582 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms