RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 HCSTQ9UBK5 93 aa8.56□□□□□ -1.04
CPNE3-209ENST00000620393 ADAM28Q9UKQ2 775 aa8.56□□□□□ -1.04
CPNE3-209ENST00000620393 DSEQ9UL01 958 aa8.56□□□□□ -1.04
CPNE3-209ENST00000620393 MRPL42Q9Y6G3 142 aaKnown RBP8.56□□□□□ -1.04
CPNE3-209ENST00000620393 EPN1Q9Y6I3 576 aaPredicted RBP8.56□□□□□ -1.04
CPNE3-209ENST00000620393 SOWAHDA6NJG2 315 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 A8MXQ7 604 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 NT5C1B-RDH14C9J2C7 533 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 SYN3O14994 580 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 TLL1O43897 1013 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 OAZ2O95190 189 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 EFEMP2O95967 443 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 PLEKP08567 350 aaPredicted RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 PDGFRBP09619 1106 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 VDRP11473 427 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ODC1P11926 461 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 CHRNB2P17787 502 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 LAG3P18627 525 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 TNFAIP3P21580 790 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ELAVL2Q12926 359 aaKnown RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ZNF394Q53GI3 561 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 TDRD12Q587J7 1177 aaKnown RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 C9orf50Q5SZB4 431 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 SPOUT1Q5T280 376 aaKnown RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 RAD9BQ6WBX8 426 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 NOP9Q86U38 636 aaKnown RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ZNF677Q86XU0 584 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 GPIHBP1Q8IV16 184 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ADGRF2Q8IZF7 708 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 FIBCD1Q8N539 461 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 HASPINQ8TF76 798 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ZNF606Q8WXB4 792 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 DDX1Q92499 740 aaKnown RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 RNF166Q96A37 237 aaPredicted RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 IGSF21Q96ID5 467 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 HEXIM2Q96MH2 286 aaKnown RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ZNF558Q96NG5 402 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 TWNKQ96RR1 684 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 GPR62Q9BZJ7 368 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 DNAI2Q9GZS0 605 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ACP6Q9NPH0 428 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 AAASQ9NRG9 546 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 SPG21Q9NZD8 308 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 ADAMTS1Q9UHI8 967 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 NOCTQ9UK39 431 aaKnown RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 STXBP5LQ9Y2K9 1186 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 NME7Q9Y5B8 376 aa8.55□□□□□ -1.04
CPNE3-209ENST00000620393 TIMM13Q9Y5L4 95 aaPredicted RBP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.55□□□□□ -1.04
CPNE3-209ENST00000620393 SCN5AQ14524 2016 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 EIF3CLB5ME19 914 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 H0YGN5 161 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 DDX3XO00571 662 aaKnown RBP eCLIP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 AKR1B10O60218 316 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 NDUFA10O95299 355 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 LCA5LO95447 670 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 CALCAP01258 141 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 FGFR3P22607 806 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 GNA15P30679 374 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 BMP8BP34820 402 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 CYLC1P35663 651 aaPredicted RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 PBX3P40426 434 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 PDE6CP51160 858 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 CDR2Q01850 454 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 MRPL58Q14197 206 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 BMS1Q14692 1282 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 CNGA2Q16280 664 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 FAM171A1Q5VUB5 890 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 OVOS1Q6IE37 1185 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 FUT10Q6P4F1 479 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 ACOT1Q86TX2 421 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 VPS36Q86VN1 386 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 TMEM173Q86WV6 379 aaPredicted RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 THEM5Q8N1Q8 247 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 SLC39A11Q8N1S5 342 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 COLGALT1Q8NBJ5 622 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 SLC30A5Q8TAD4 765 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 EPS8L1Q8TE68 723 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 SLC20A1Q8WUM9 679 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 BCL7CQ8WUZ0 217 aaPredicted RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 TFAP2BQ92481 460 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 CLP1Q92989 425 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 TNIP3Q96KP6 325 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 RNPC3Q96LT9 517 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 PCDHB18PQ96TA0 734 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 EIF3CQ99613 913 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 ZSWIM1Q9BR11 485 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 ACBD6Q9BR61 282 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 UBE2OQ9C0C9 1292 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 DEF6Q9H4E7 631 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 DDX43Q9NXZ2 648 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 HMGXB4Q9UGU5 601 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 PUF60Q9UHX1 559 aaKnown RBP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 PCDHB12Q9Y5F1 795 aa8.54□□□□□ -1.04
CPNE3-209ENST00000620393 SF3B1O75533 1304 aaKnown RBP eCLIP8.54□□□□□ -1.04
CPNE3-209ENST00000620393 A0A087X0T9 212 aa8.53□□□□□ -1.04
CPNE3-209ENST00000620393 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.53□□□□□ -1.04
CPNE3-209ENST00000620393 GRXCR1A8MXD5 290 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms