RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 PLXNB2O15031 1838 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 TRIP12Q14669 1992 aaPredicted RBP13.13□□□□□ -0.31
CIITA-212ENST00000618207 ASAP2O43150 1006 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 PPFIA2O75334 1257 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 CHKAP35790 457 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 HP1BP3Q5SSJ5 553 aaPredicted RBP13.13□□□□□ -0.31
CIITA-212ENST00000618207 EP400NLQ6ZTU2 488 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 PNMA8AQ86V59 439 aaPredicted RBP13.13□□□□□ -0.31
CIITA-212ENST00000618207 CD302Q8IX05 232 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 EIF1ADQ8N9N8 165 aaKnown RBP13.13□□□□□ -0.31
CIITA-212ENST00000618207 HEXIM2Q96MH2 286 aaKnown RBP13.13□□□□□ -0.31
CIITA-212ENST00000618207 DDX23Q9BUQ8 820 aaKnown RBP13.13□□□□□ -0.31
CIITA-212ENST00000618207 DCLK3Q9C098 648 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 LRRC19Q9H756 370 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 VTA1Q9NP79 307 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 GRIN2DO15399 1336 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 CITO14578 2027 aa13.13□□□□□ -0.31
CIITA-212ENST00000618207 GRAP2O75791 330 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 PLCB3Q01970 1234 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 ACVR2BQ13705 512 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 CYP1B1Q16678 543 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 C12orf29Q8N999 325 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 MDM1Q8TC05 714 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 RAPGEF5Q92565 580 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 KIF12Q96FN5 646 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 CPXM1Q96SM3 734 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 OSMRQ99650 979 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 TINF2Q9BSI4 451 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 EPB41L4BQ9H329 900 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.12□□□□□ -0.31
CIITA-212ENST00000618207 SCN1AP35498 2009 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 TMEM191CA6NGB0 347 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 HMGB1P1B2RPK0 211 aaPredicted RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 PPFIA4O75335 1185 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 ZSCAN5DPP0CG00 497 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 ETS1P14921 441 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 FNTAP49354 379 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 RAD23BP54727 409 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 PSMC1P62191 440 aaKnown RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 NFX1Q12986 1120 aaKnown RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 MTM1Q13496 603 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 TMEM132DQ14C87 1099 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 CCDC38Q502W7 563 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 ILDR2Q71H61 639 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 B4GALNT4Q76KP1 1039 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 GLIS1Q8NBF1 620 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 EPS8L3Q8TE67 593 aaKnown RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 KCNN1Q92952 543 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 HPDLQ96IR7 371 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 ELOVL4Q9GZR5 314 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 RRAGCQ9HB90 399 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 IP6K2Q9UHH9 426 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 PPME1Q9Y570 386 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 FOXO6A8MYZ6 492 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 M0QYV0 167 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 PPEF2O14830 753 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 EIF3HO15372 352 aaKnown RBP eCLIP13.12□□□□□ -0.31
CIITA-212ENST00000618207 MAGEB2O15479 319 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 NPTXRO95502 500 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 CALB1P05937 261 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 MMP3P08254 477 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 IBSPP21815 317 aaPredicted RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 PSMA2P25787 234 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 ITGA8P53708 1063 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 MARCH8Q5T0T0 291 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 LRIG3Q6UXM1 1119 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 RUFY4Q6ZNE9 571 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 ZNF365Q70YC5 407 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 VCPIP1Q96JH7 1222 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 KATNBL1Q9H079 304 aa13.12□□□□□ -0.31
CIITA-212ENST00000618207 PABPC3Q9H361 631 aaKnown RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 METTL5Q9NRN9 209 aaKnown RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 CWC15Q9P013 229 aaKnown RBP13.12□□□□□ -0.31
CIITA-212ENST00000618207 NDUFAB1O14561 156 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 TSPAN1O60635 241 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 IFNB1P01574 187 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 KRT3P12035 628 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 CHADLQ6NUI6 762 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 SESTD1Q86VW0 696 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 SLC4A11Q8NBS3 891 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 ACAP3Q96P50 834 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 LPIN3Q9BQK8 851 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 ADPGKQ9BRR6 497 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 SNTG2Q9NY99 539 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 DNPEPQ9ULA0 475 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 ZNF148Q9UQR1 794 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 PSTPIP1O43586 416 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 STRNO43815 780 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 SHOX2O60902 331 aaPredicted RBP13.11□□□□□ -0.31
CIITA-212ENST00000618207 GAS8O95995 478 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 LSP1P33241 339 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 RGS7P49802 495 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 ZNF200P98182 395 aaPredicted RBP13.11□□□□□ -0.31
CIITA-212ENST00000618207 TNFAIP2Q03169 654 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 PTPN11Q06124 597 aaPredicted RBP13.11□□□□□ -0.31
CIITA-212ENST00000618207 GRM1Q13255 1194 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 CDO1Q16878 200 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 KDM7AQ6ZMT4 941 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 CAPN12Q6ZSI9 719 aa13.11□□□□□ -0.31
CIITA-212ENST00000618207 CATSPER4Q7RTX7 472 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms