RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PDK1Q15118 436 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 CHI3L2Q15782 390 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 C6orf10Q5SRN2 563 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 ASAP3Q8TDY4 903 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 ZC3H15Q8WU90 426 aaKnown RBP14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SHCBP1LQ9BZQ2 653 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 OLFML3Q9NRN5 406 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 TJP2Q9UDY2 1190 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 LRRIQ1Q96JM4 1722 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 EEF2KO00418 725 aaKnown RBP14.63□□□□□ -0.07
CPSF1-212ENST00000616140 OGTO15294 1046 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 IL10P22301 178 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 OCA2Q04671 838 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 ORC1Q13415 861 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 SLC47A2Q86VL8 602 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 ZDHHC15Q96MV8 337 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 MTMR12Q9C0I1 747 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 C20orf96Q9NUD7 363 aaPredicted RBP14.63□□□□□ -0.07
CPSF1-212ENST00000616140 ERAP1Q9NZ08 941 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 STX18Q9P2W9 335 aaKnown RBP14.63□□□□□ -0.07
CPSF1-212ENST00000616140 AFF4Q9UHB7 1163 aaKnown RBP14.63□□□□□ -0.07
CPSF1-212ENST00000616140 KIAA1210Q9ULL0 1709 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 ENO4A6NNW6 628 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 ANGPT2O15123 496 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 HBP1O60381 514 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 CAP2P40123 477 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 PPHLN1Q8NEY8 458 aaKnown RBP14.63□□□□□ -0.07
CPSF1-212ENST00000616140 CD248Q9HCU0 757 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 FAM8A1Q9UBU6 413 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 MAP2P11137 1827 aaKnown RBP14.63□□□□□ -0.07
CPSF1-212ENST00000616140 C3orf67Q6ZVT6 689 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 ARHGAP18Q8N392 663 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 CXorf56Q9H5V9 222 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 MYOZ2Q9NPC6 264 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 PHTF1Q9UMS5 762 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 PXDNQ92626 1479 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 SPATA31A5Q5VU36 1347 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 SPATA31A7Q8IWB4 1347 aa14.63□□□□□ -0.07
CPSF1-212ENST00000616140 GTPBP10A4D1E9 387 aaKnown RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 LRRC10BA6NIK2 292 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 KLHL2O95198 593 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 SLC7A14Q8TBB6 771 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 ZNF507Q8TCN5 953 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 EME1Q96AY2 570 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 CMTM5Q96DZ9 223 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 PSTPIP1O43586 416 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 CYTH3O43739 400 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 SEC24DO94855 1032 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 TCN1P20061 433 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 BMP6P22004 513 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 TCF7P36402 384 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 GRIK1P39086 918 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 COL9A3Q14050 684 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 ATPAF2Q8N5M1 289 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 URGCPQ8TCY9 931 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 CAVIN3Q969G5 261 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 SLC35C1Q96A29 364 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 NSL1Q96IY1 281 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 ARHGEF38Q9NXL2 777 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 JCADQ9P266 1359 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 A0A0A6YYK5 440 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 GH1P01241 217 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 KCNA3P22001 575 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 KCNMA1Q12791 1236 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 PRPF39Q86UA1 669 aaKnown RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 GMCL1Q96IK5 515 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 MRPL1Q9BYD6 325 aaKnown RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 BLOC1S4Q9NUP1 217 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 NFIBO00712 420 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 C6orf222P0C671 652 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 TAL1P17542 331 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 PTGER2P43116 358 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 PCSK7Q16549 785 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 TTC39BQ5VTQ0 682 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 BTNL9Q6UXG8 535 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 NLRP9Q7RTR0 991 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 EML4Q9HC35 981 aaKnown RBP14.62□□□□□ -0.07
CPSF1-212ENST00000616140 HEY2Q9UBP5 337 aa14.62□□□□□ -0.07
CPSF1-212ENST00000616140 SMIM22K7EJ46 135 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 AP3B1O00203 1094 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 GMPSP49915 693 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-212ENST00000616140 OTUD4Q01804 1114 aaKnown RBP14.61□□□□□ -0.07
CPSF1-212ENST00000616140 ZBTB17Q13105 803 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 GOLGA7BQ2TAP0 167 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 TFDP3Q5H9I0 405 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 IPMKQ8NFU5 416 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 KRT35Q92764 455 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 CEP19Q96LK0 163 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 TMEM121Q9BTD3 319 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 FRMD8Q9BZ67 464 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-212ENST00000616140 hCG_2014768A0A024R1R8 64 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 TLR2O60603 784 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 CD4P01730 458 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 MYL2P10916 166 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 GYS1P13807 737 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 PTENP60484 403 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 ERVK-9P63128 1117 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 KCNK18Q7Z418 384 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 SPATA2LQ8IUW3 424 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-212ENST00000616140 FBXO36Q8NEA4 188 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms