RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 BCO2Q9BYV7 579 aa12.24□□□□□ -0.45
SLIRP-212ENST00000613856 TLR9Q9NR96 1032 aa12.24□□□□□ -0.45
SLIRP-212ENST00000613856 RNF19AQ9NV58 838 aa12.24□□□□□ -0.45
SLIRP-212ENST00000613856 AGAP1Q9UPQ3 857 aa12.24□□□□□ -0.45
SLIRP-212ENST00000613856 ZKSCAN5Q9Y2L8 839 aa12.24□□□□□ -0.45
SLIRP-212ENST00000613856 R3HCC1Q9Y3T6 440 aaKnown RBP12.24□□□□□ -0.45
SLIRP-212ENST00000613856 USP15Q9Y4E8 981 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-212ENST00000613856 MRPL42Q9Y6G3 142 aaKnown RBP12.24□□□□□ -0.45
SLIRP-212ENST00000613856 SSU72P8A0A1W2PR75 194 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 SERPING1P05155 500 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 ITGB1P05556 798 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 CCDC172P0C7W6 258 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 P4HA1P13674 534 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 SP100P23497 879 aaPredicted RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 ASPAP45381 313 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 YWHAEP62258 255 aaKnown RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 SOX4Q06945 474 aaPredicted RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 MYO1EQ12965 1108 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 ARHGAP44Q17R89 818 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 CLLU1OSQ5K130 101 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 HGSNATQ68CP4 663 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 SCARA3Q6AZY7 606 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 NPAS4Q8IUM7 802 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 SUGP1Q8IWZ8 645 aaKnown RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 FAM71AQ8IYT1 594 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 RNF169Q8NCN4 708 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 URGCPQ8TCY9 931 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 CLP1Q92989 425 aaKnown RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 ZNF689Q96CS4 500 aaPredicted RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 HPDLQ96IR7 371 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 RPGRIP1Q96KN7 1286 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 UROC1Q96N76 676 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 ZNF830Q96NB3 372 aaPredicted RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 CDH22Q9UJ99 828 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 CNTN6Q9UQ52 1028 aa12.23□□□□□ -0.45
SLIRP-212ENST00000613856 BZW2Q9Y6E2 419 aaKnown RBP12.23□□□□□ -0.45
SLIRP-212ENST00000613856 MYO10Q9HD67 2058 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 FOXN3O00409 490 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-212ENST00000613856 PPEF2O14830 753 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 PER2O15055 1255 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 ACO1P21399 889 aaKnown RBP12.22□□□□□ -0.45
SLIRP-212ENST00000613856 PAX3P23760 479 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 RPL9P32969 192 aaKnown RBP12.22□□□□□ -0.45
SLIRP-212ENST00000613856 NRIP1P48552 1158 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 AFF1P51825 1210 aaKnown RBP12.22□□□□□ -0.45
SLIRP-212ENST00000613856 TUSC3Q13454 348 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 BTG3Q14201 252 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-212ENST00000613856 CBX2Q14781 532 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-212ENST00000613856 SV2CQ496J9 727 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 PAN2Q504Q3 1202 aaKnown RBP12.22□□□□□ -0.45
SLIRP-212ENST00000613856 IRF2BP2Q7Z5L9 587 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 CCDC170Q8IYT3 715 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 TTC39CQ8N584 583 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 SPPL3Q8TCT6 385 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 ARID3AQ99856 593 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 LMAN2LQ9H0V9 348 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 SMOC2Q9H3U7 446 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 CYP3A43Q9HB55 503 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.22□□□□□ -0.456e-11■■■■■ 34.8
SLIRP-212ENST00000613856 MIOSQ9NXC5 875 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 ARHGAP20Q9P2F6 1191 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 KANSL3Q9P2N6 904 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 HCSTQ9UBK5 93 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 PCDHB7Q9Y5E2 793 aa12.22□□□□□ -0.45
SLIRP-212ENST00000613856 SOWAHDA6NJG2 315 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 NCK2O43639 380 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 DGKIO75912 1065 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 GFPT2O94808 682 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 RB1P06400 928 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 PNMA6AP0CW24 399 aaPredicted RBP12.21□□□□□ -0.45
SLIRP-212ENST00000613856 AVPR2P30518 371 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 TAF6P49848 677 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 ZNF132P52740 706 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 TNNC1P63316 161 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 DSC1Q08554 894 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 KLHL30Q0D2K2 578 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 WDR72Q3MJ13 1102 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 NOMO2Q5JPE7 1267 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 RAD9BQ6WBX8 426 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 ZSCAN30Q86W11 494 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 TMEM130Q8N3G9 435 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 KLHL23Q8NBE8 558 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 ATOH1Q92858 354 aaPredicted RBP12.21□□□□□ -0.45
SLIRP-212ENST00000613856 ELMO3Q96BJ8 720 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 DDX27Q96GQ7 796 aaKnown RBP12.21□□□□□ -0.45
SLIRP-212ENST00000613856 CHP1Q99653 195 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 MRPL9Q9BYD2 267 aaKnown RBP12.21□□□□□ -0.45
SLIRP-212ENST00000613856 GOLGA2P5Q9HBQ8 144 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 GDAP2Q9NXN4 497 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.21□□□□□ -0.45
SLIRP-212ENST00000613856 LRFN2Q9ULH4 789 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 PYCARDQ9ULZ3 195 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 POLIQ9UNA4 740 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 INPP5FQ9Y2H2 1132 aa12.21□□□□□ -0.45
SLIRP-212ENST00000613856 PTPRZ1P23471 2315 aaPredicted RBP12.21□□□□□ -0.46
SLIRP-212ENST00000613856 PODXLO00592 558 aa12.2□□□□□ -0.46
SLIRP-212ENST00000613856 CLSTN1O94985 981 aa12.2□□□□□ -0.46
SLIRP-212ENST00000613856 POMCP01189 267 aa12.2□□□□□ -0.46
SLIRP-212ENST00000613856 FAM163BP0C2L3 166 aa12.2□□□□□ -0.46
SLIRP-212ENST00000613856 FGFR1P11362 822 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms