RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 COX16Q9P0S2 106 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 SEPT10Q9P0V9 454 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 NKX1-2Q9UD57 310 aaPredicted RBP13.23□□□□□ -0.29
LIG1-221ENST00000613670 HERC5Q9UII4 1024 aaKnown RBP13.23□□□□□ -0.29
LIG1-221ENST00000613670 CHKBQ9Y259 395 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 E2F8A0AVK6 867 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 C2orf71A6NGG8 1288 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 TRIM49D1C9J1S8 452 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 GRAP2O75791 330 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 CETPP11597 493 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 EFTUD2Q15029 972 aaKnown RBP eCLIP13.23□□□□□ -0.291e-6■■■■■ 30.3
LIG1-221ENST00000613670 SPOCD1Q6ZMY3 1216 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 SEPT12Q8IYM1 358 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 EBF2Q9HAK2 575 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 STARD13Q9Y3M8 1113 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 PYGBP11216 843 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 ATP4AP20648 1035 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 SFNP31947 248 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 ZNF200P98182 395 aaPredicted RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 ATG16L1Q676U5 607 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 SPATA18Q8TC71 538 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 BORCS6Q96GS4 357 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 ZBTB45Q96K62 511 aaPredicted RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 MBOAT7Q96N66 472 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 GLIS2Q9BZE0 524 aaPredicted RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 TBXAS1P24557 533 aaPredicted RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 ZNF699Q32M78 642 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 CCDC33Q8N5R6 958 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 TTC13Q8NBP0 860 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 SCG3Q8WXD2 468 aaKnown RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 CNKSR1Q969H4 720 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 MTBPQ96DY7 904 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 APOL6Q9BWW8 343 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 PCMTD2Q9NV79 361 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 LOC100653049A0A140TA62 436 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 NOP56O00567 594 aaKnown RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 KRT34O76011 436 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 CCND2P30279 289 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 UGCGQ16739 394 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 PLEKHO2Q8TD55 490 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 TSNARE1Q96NA8 513 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 TXLNGYQ9BZA5 131 aa13.22□□□□□ -0.29
LIG1-221ENST00000613670 DENND2DQ9H6A0 471 aaPredicted RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 ZMYND8Q9ULU4 1186 aaPredicted RBP13.22□□□□□ -0.29
LIG1-221ENST00000613670 PRPSAP2O60256 369 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 EDF1O60869 148 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 AP1G2O75843 785 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 KRT7P08729 469 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 MORF4L2Q15014 288 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 PDK4Q16654 411 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 NXNQ6DKJ4 435 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 PPIL6Q8IXY8 311 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 ABRAQ8N0Z2 381 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 HELQQ8TDG4 1101 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 DDX50Q9BQ39 737 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 TMX2Q9Y320 296 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 CACNA1SQ13698 1873 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 POLRMTO00411 1230 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 CFLARO15519 480 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 PRKCEQ02156 737 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 SPP2Q13103 211 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 BMPR2Q13873 1038 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 TFDP3Q5H9I0 405 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 MROH9Q5TGP6 573 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 SLFN12LQ6IEE8 588 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 PRPF39Q86UA1 669 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 RASSF3Q86WH2 238 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 WDR75Q8IWA0 830 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 TRIM42Q8IWZ5 723 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 DEPDC1BQ8WUY9 529 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 HEXIM2Q96MH2 286 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 NLRP4Q96MN2 994 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 FERMT1Q9BQL6 677 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 ADPGKQ9BRR6 497 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 MOV10L1Q9BXT6 1211 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 AGO4Q9HCK5 861 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 MTO1Q9Y2Z2 717 aaKnown RBP13.21□□□□□ -0.29
LIG1-221ENST00000613670 ECM29Q5VYK3 1845 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 SLIT2O94813 1529 aa13.21□□□□□ -0.29
LIG1-221ENST00000613670 DPPA5A6NC42 116 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 LGR5O75473 907 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 DGAT1O75907 488 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 VCPP55072 806 aaKnown RBP13.21□□□□□ -0.3
LIG1-221ENST00000613670 AP2B1P63010 937 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 IGBP1P78318 339 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 ROR1Q01973 937 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 MAMLD1Q13495 774 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 RASA2Q15283 850 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 CHI3L2Q15782 390 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 RABGAP1LQ5R372 815 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 FAM102AQ5T9C2 384 aaPredicted RBP13.21□□□□□ -0.3
LIG1-221ENST00000613670 SH3BP5LQ7L8J4 393 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 MAP7D3Q8IWC1 876 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 GLIS1Q8NBF1 620 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 RAB3IL1Q8TBN0 382 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 SREK1Q8WXA9 508 aaKnown RBP13.21□□□□□ -0.3
LIG1-221ENST00000613670 PICK1Q9NRD5 415 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 AAASQ9NRG9 546 aa13.21□□□□□ -0.3
LIG1-221ENST00000613670 KCNN4O15554 427 aa13.2□□□□□ -0.3
LIG1-221ENST00000613670 ENTPD3O75355 529 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms