RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 GET4Q7L5D6 327 aaPredicted RBP18.06■□□□□ 0.48
TRIM28-215ENST00000601150 LRRTM3Q86VH5 581 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 KBTBD7Q8WVZ9 684 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 NELFBQ8WX92 580 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 CRISPLD1Q9H336 500 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 VRTNQ9H8Y1 702 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.06■□□□□ 0.48
TRIM28-215ENST00000601150 DNMT3BQ9UBC3 853 aaKnown RBP18.06■□□□□ 0.48
TRIM28-215ENST00000601150 MYO10Q9HD67 2058 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 BICDL2A1A5D9 508 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 PI4K2BG5E9Z4 385 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 DCXO43602 365 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 STX10O60499 249 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 TACC1O75410 805 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 CLSTN1O94985 981 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 ALADP13716 330 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 PTPN2P17706 415 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 ACAT1P24752 427 aaKnown RBP18.05■□□□□ 0.48
TRIM28-215ENST00000601150 GTF2H1P32780 548 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 PIK3CAP42336 1068 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 ALDH1A3P47895 512 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 GCLMP48507 274 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 PPP3CAQ08209 521 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 NFE2Q16621 373 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-215ENST00000601150 SGSM1Q2NKQ1 1148 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 PABPC1LQ4VXU2 614 aaKnown RBP18.05■□□□□ 0.48
TRIM28-215ENST00000601150 ZNF667Q5HYK9 610 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 INTS6LQ5JSJ4 861 aaKnown RBP18.05■□□□□ 0.48
TRIM28-215ENST00000601150 TTC9BQ8N6N2 239 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 SPPL2BQ8TCT7 592 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 ZNF512Q96ME7 567 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-215ENST00000601150 MYADMQ96S97 322 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 NUP62CLQ9H1M0 184 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 NXF1Q9UBU9 619 aaKnown RBP18.05■□□□□ 0.48
TRIM28-215ENST00000601150 MUTYHQ9UIF7 546 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 CTNND2Q9UQB3 1225 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 SLC27A5Q9Y2P5 690 aa18.05■□□□□ 0.48
TRIM28-215ENST00000601150 N4BP1O75113 896 aaKnown RBP18.04■□□□□ 0.48
TRIM28-215ENST00000601150 HLA-DRAP01903 254 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 RHOP08100 348 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 TUFMP49411 452 aaKnown RBP18.04■□□□□ 0.48
TRIM28-215ENST00000601150 EPHB3P54753 998 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 IQCEQ6IPM2 695 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 TTI2Q6NXR4 508 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 TAF4BQ92750 862 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 CEP63Q96MT8 703 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 CORO1BQ9BR76 489 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 MRPL45Q9BRJ2 306 aaKnown RBP18.04■□□□□ 0.48
TRIM28-215ENST00000601150 SNX25Q9H3E2 840 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 MMRN2Q9H8L6 949 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 TMEM8AQ9HCN3 771 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 AVENQ9NQS1 362 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-215ENST00000601150 TMLHEQ9NVH6 421 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 ABI2Q9NYB9 513 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-215ENST00000601150 CEP72Q9P209 647 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 LIMD1Q9UGP4 676 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 CDH9Q9ULB4 789 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 PCDHB5Q9Y5E4 795 aa18.04■□□□□ 0.48
TRIM28-215ENST00000601150 HAPLN1P10915 354 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-215ENST00000601150 P4HA1P13674 534 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 GNL1P36915 607 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-215ENST00000601150 PAK1Q13153 545 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 PTPN21Q16825 1174 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 MGAT5BQ3V5L5 792 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 ITFG1Q8TB96 612 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 PKMYT1Q99640 499 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 SEPT5Q99719 369 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-215ENST00000601150 DUSP9Q99956 384 aaKnown RBP18.03■□□□□ 0.48
TRIM28-215ENST00000601150 SYT15Q9BQS2 421 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 EPHX3Q9H6B9 360 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 EPS15L1Q9UBC2 864 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 ARMCX3Q9UH62 379 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-215ENST00000601150 GTF3C4Q9UKN8 822 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 MRPS23Q9Y3D9 190 aaKnown RBP18.03■□□□□ 0.48
TRIM28-215ENST00000601150 ASB3Q9Y575 518 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 ZFP37Q9Y6Q3 630 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-215ENST00000601150 PTPRDP23468 1912 aa18.03■□□□□ 0.48
TRIM28-215ENST00000601150 ZNF197O14709 1029 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 HCRTO43612 131 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 ASS1P00966 412 aaKnown RBP18.02■□□□□ 0.48
TRIM28-215ENST00000601150 PDGFRBP09619 1106 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 LAMP2P13473 410 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 LMO2P25791 158 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 CDR1P51861 262 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 DCAF17Q5H9S7 520 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-215ENST00000601150 CYP4A22Q5TCH4 519 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 TCERG1LQ5VWI1 586 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 KRT39Q6A163 491 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 FILIP1Q7Z7B0 1213 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 LEMD2Q8NC56 503 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 OR6B3Q8NGW1 331 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 IMPG2Q9BZV3 1241 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 SMYD3Q9H7B4 428 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 METTL14Q9HCE5 456 aaKnown RBP18.02■□□□□ 0.48
TRIM28-215ENST00000601150 ABCB6Q9NP58 842 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 CDH7Q9ULB5 785 aa18.02■□□□□ 0.48
TRIM28-215ENST00000601150 MYBPHLA2RUH7 354 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 ATP2C2O75185 946 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 SOAT2O75908 522 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 MXI1P50539 228 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms