RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PCDHB13Q9Y5F0 798 aa18.96■□□□□ 0.63
SHKBP1-223ENST00000600552 TSC2P49815 1807 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 PRPF40AO75400 957 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 PRPF6O94906 941 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 PRAMEF12O95522 483 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 ITGB3P05106 788 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 HAPLN1P10915 354 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 ACAT1P24752 427 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 GPR15P49685 360 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 TSPY1Q01534 308 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 SATB1Q01826 763 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 TNK2Q07912 1038 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 PPP2R5DQ14738 602 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 HEATR6Q6AI08 1181 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 PRR23BQ6ZRT6 265 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 DGLUCYQ7Z3D6 616 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 ZNF687Q8N1G0 1237 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 ZBTB44Q8NCP5 570 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 SECISBP2LQ93073 1101 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 ZNF560Q96MR9 790 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 MKNK1Q9BUB5 465 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 FGFBP2Q9BYJ0 223 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 TASP1Q9H6P5 420 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 TMLHEQ9NVH6 421 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 RBAKQ9NYW8 714 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 SEL1LQ9UBV2 794 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 USP18Q9UMW8 372 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 PCDHB5Q9Y5E4 795 aa18.95■□□□□ 0.62
SHKBP1-223ENST00000600552 ZNF638Q14966 1978 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 A0A087X0B3 334 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 SPECC1L-ADORA2AF8WAN1 911 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 ARNTLO00327 626 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 PPP1R37O75864 691 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 CHRNB1P11230 501 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 CDC25CP30307 473 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 CXCL12P48061 93 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 CCR3P51677 355 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 LRRC32Q14392 662 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 PON2Q15165 354 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 STK38Q15208 465 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 RSPO4Q2I0M5 234 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 ARHGAP29Q52LW3 1261 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 FOXD4L5Q5VV16 416 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 LMBRD2Q68DH5 695 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 SCARA3Q6AZY7 606 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 TXNDC11Q6PKC3 985 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 ERMP1Q7Z2K6 904 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 CSGALNACT2Q8N6G5 542 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 BPIFB1Q8TDL5 484 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 CACTINQ8WUQ7 758 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 FOXD4L4Q8WXT5 416 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 BORCS6Q96GS4 357 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 CBWD1Q9BRT8 395 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 SLC46A2Q9BY10 475 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 C8orf33Q9H7E9 229 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 RAB23Q9ULC3 237 aa18.94■□□□□ 0.62
SHKBP1-223ENST00000600552 KIF26AQ9ULI4 1882 aaPredicted RBP18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 HUS1O60921 280 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 NRLP54845 237 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 FCHO2Q0JRZ9 810 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 BRSK2Q8IWQ3 736 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 PDCL2Q8N4E4 241 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 MAB21L3Q8N8X9 362 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 SPPL2BQ8TCT7 592 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 HPS3Q969F9 1004 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 STRA6Q9BX79 667 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 IL21Q9HBE4 155 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 PDE11AQ9HCR9 933 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 THG1LQ9NWX6 298 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 TFIP11Q9UBB9 837 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 HSFX1Q9UBD0 423 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 MTMR6Q9Y217 621 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 R3HCC1Q9Y3T6 440 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 COL4A2P08572 1712 aa18.93■□□□□ 0.62
SHKBP1-223ENST00000600552 CHURC1-FNTBB4DL54 471 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 LILRB5O75023 590 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 PNPLA4P41247 253 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 FNTBP49356 437 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 GAS6Q14393 721 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 SLC39A14Q15043 492 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 DDR2Q16832 855 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 Q6ZS52 159 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 CCDC65Q8IXS2 484 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 C1orf127Q8N9H9 656 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 C2orf15Q8WU43 125 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 EPC1Q9H2F5 836 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 GKN1Q9NS71 199 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 DDX43Q9NXZ2 648 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 GMEB2Q9UKD1 530 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 L1RE1Q9UN81 338 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 SNX9Q9Y5X1 595 aa18.92■□□□□ 0.62
SHKBP1-223ENST00000600552 HCRTO43612 131 aa18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 EXTL3O43909 919 aa18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 LDHAP00338 332 aaKnown RBP18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 TMEM191BP0C7N4 346 aa18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 GARTP22102 1010 aa18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 CYP2F1P24903 491 aa18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 CTHP32929 405 aa18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 AVPR1AP37288 418 aa18.91■□□□□ 0.62
SHKBP1-223ENST00000600552 MYL7Q01449 175 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms