RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 RRAGCQ9HB90 399 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 SMG5Q9UPR3 1016 aaKnown RBP21.36■■□□□ 1.01
UPF1-207ENST00000599848 TRIM49BA6NDI0 452 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 VWA5AO00534 786 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 AP1G2O75843 785 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 HLA-DPA1P20036 260 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 LRRC71Q8N4P6 559 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 DCLK3Q9C098 648 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 FBXO44Q9H4M3 255 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 BCL2L12Q9HB09 334 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 AAR2Q9Y312 384 aaKnown RBP21.36■■□□□ 1.01
UPF1-207ENST00000599848 EVPLLA8MZ36 301 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 TCF3P15923 654 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 REEP2Q9BRK0 252 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 TRIM9Q9C026 710 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 WDCPQ9H6R7 721 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 KLRC2P26717 231 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 GTF2H1P32780 548 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 PEX6Q13608 980 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 ZNF544Q6NX49 715 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 PLAAQ9Y263 795 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 TRPM1Q7Z4N2 1603 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 PTPN3P26045 913 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 SGCGQ13326 291 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 KIZQ2M2Z5 673 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 MFSD4BQ5TF39 518 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 VDRP11473 427 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 ATN1P54259 1190 aaPredicted RBP21.35■■□□□ 1.01
UPF1-207ENST00000599848 PLA2G4FQ68DD2 849 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 ABHD16BQ9H3Z7 469 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 TLR8Q9NR97 1041 aaKnown RBP21.35■■□□□ 1.01
UPF1-207ENST00000599848 MMEP08473 750 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 FNTAP49354 379 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 SKOR1P84550 965 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 PHACTR4Q8IZ21 702 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 MRPL48Q96GC5 212 aaKnown RBP21.35■■□□□ 1.01
UPF1-207ENST00000599848 PHF20Q9BVI0 1012 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 SCUBE2Q9NQ36 999 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 RPRD1BQ9NQG5 326 aaKnown RBP21.35■■□□□ 1.01
UPF1-207ENST00000599848 TRMT6Q9UJA5 497 aaKnown RBP21.35■■□□□ 1.01
UPF1-207ENST00000599848 DYRK1BQ9Y463 629 aa21.35■■□□□ 1.01
UPF1-207ENST00000599848 GFPT1Q06210 699 aaPredicted RBP21.34■■□□□ 1.01
UPF1-207ENST00000599848 SPIRE2Q8WWL2 714 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 CYP3A43Q9HB55 503 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 A0A087WZ62 844 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 IFRD1O00458 451 aaPredicted RBP21.34■■□□□ 1.01
UPF1-207ENST00000599848 ITGA9Q13797 1035 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 LMBRD2Q68DH5 695 aaPredicted RBP21.34■■□□□ 1.01
UPF1-207ENST00000599848 CPA4Q9UI42 421 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 SUPT3HB4E1H0 165 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 RHOBTB1O94844 696 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 CHRM3P20309 590 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 MZF1P28698 734 aaPredicted RBP21.34■■□□□ 1.01
UPF1-207ENST00000599848 CCDC149Q6ZUS6 474 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 DDX42Q86XP3 938 aaKnown RBP eCLIP21.34■■□□□ 1.01
UPF1-207ENST00000599848 DDI1Q8WTU0 396 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 CCDC3Q9BQI4 270 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 TRIM4Q9C037 500 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 FAM49BQ9NUQ9 324 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 WARS2Q9UGM6 360 aaKnown RBP21.34■■□□□ 1.01
UPF1-207ENST00000599848 SSU72P8A0A1W2PR75 194 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 PDHXO00330 501 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 FXR2P51116 673 aaKnown RBP eCLIP21.34■■□□□ 1.015e-7■■■■□ 22
UPF1-207ENST00000599848 XPNPEP3Q9NQH7 507 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 PCDHB5Q9Y5E4 795 aa21.34■■□□□ 1.01
UPF1-207ENST00000599848 MLNP12872 115 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 IKBKEQ14164 716 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 AASDHQ4L235 1098 aaPredicted RBP21.33■■□□□ 1.01
UPF1-207ENST00000599848 PAN2Q504Q3 1202 aaKnown RBP21.33■■□□□ 1.01
UPF1-207ENST00000599848 METTL7BQ6UX53 244 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 DTNBP1Q96EV8 351 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 TAAR1Q96RJ0 339 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 ZC3H7BQ9UGR2 993 aaKnown RBP21.33■■□□□ 1.01
UPF1-207ENST00000599848 TSR3Q9UJK0 312 aaKnown RBP21.33■■□□□ 1.01
UPF1-207ENST00000599848 EPB42P16452 691 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 TUFMP49411 452 aaKnown RBP21.33■■□□□ 1.01
UPF1-207ENST00000599848 BCAT1P54687 386 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 FOXD4Q12950 439 aaPredicted RBP21.33■■□□□ 1.01
UPF1-207ENST00000599848 SUGP1Q8IWZ8 645 aaKnown RBP21.33■■□□□ 1.01
UPF1-207ENST00000599848 USP33Q8TEY7 942 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 CYFIP2Q96F07 1278 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 CLMNQ96JQ2 1002 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 CAMKK2Q96RR4 588 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 RNF208Q9H0X6 261 aa21.33■■□□□ 1.01
UPF1-207ENST00000599848 ZNF839A8K0R7 811 aa21.33■■□□□ 1
UPF1-207ENST00000599848 RHOCP08134 193 aa21.33■■□□□ 1
UPF1-207ENST00000599848 PPM1LQ5SGD2 360 aa21.33■■□□□ 1
UPF1-207ENST00000599848 PRAMEF18Q5VWM3 479 aa21.33■■□□□ 1
UPF1-207ENST00000599848 ADGRE3Q9BY15 652 aa21.33■■□□□ 1
UPF1-207ENST00000599848 JMJD4Q9H9V9 463 aa21.33■■□□□ 1
UPF1-207ENST00000599848 MEFVO15553 781 aaPredicted RBP21.33■■□□□ 1
UPF1-207ENST00000599848 RPN2P04844 631 aa21.33■■□□□ 1
UPF1-207ENST00000599848 ANO5Q75V66 913 aa21.33■■□□□ 1
UPF1-207ENST00000599848 ATG9AQ7Z3C6 839 aa21.33■■□□□ 1
UPF1-207ENST00000599848 SETD3Q86TU7 594 aaPredicted RBP21.33■■□□□ 1
UPF1-207ENST00000599848 DPF2Q92785 391 aa21.33■■□□□ 1
UPF1-207ENST00000599848 AGBL1Q96MI9 1066 aa21.33■■□□□ 1
UPF1-207ENST00000599848 MROH7Q68CQ1 1323 aa21.33■■□□□ 1
UPF1-207ENST00000599848 CYB561D2O14569 222 aa21.32■■□□□ 1
UPF1-207ENST00000599848 PRKAA1Q13131 559 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms