RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 HSCBQ8IWL3 235 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 GPD1LQ8N335 351 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 CSGALNACT2Q8N6G5 542 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 LRRC52Q8N7C0 313 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 C1orf127Q8N9H9 656 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 ZSWIM2Q8NEG5 633 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 GIPC2Q8TF65 315 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 ANKRD36BP1Q96IX9 119 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 IER2Q9BTL4 223 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 PCIF1Q9H4Z3 704 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 TASP1Q9H6P5 420 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 C8orf33Q9H7E9 229 aaPredicted RBP10.55□□□□□ -0.72
VRK3-216ENST00000599342 ZMYM5Q9UJ78 669 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 PCDHGA2Q9Y5H1 932 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 PATJQ8NI35 1801 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 SLC38A8A6NNN8 435 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 ARNTLO00327 626 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 CUTAO60888 179 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 YEATS4O95619 227 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 HAPLN1P10915 354 aaPredicted RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 PDIA4P13667 645 aaKnown RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 ID4P47928 161 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 WNT7BP56706 349 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 ASIC1P78348 528 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 RBP5P82980 135 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 MYL7Q01449 175 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 FCHO2Q0JRZ9 810 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 MYO1EQ12965 1108 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 LRRC32Q14392 662 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 SURF1Q15526 300 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 NFE2Q16621 373 aaPredicted RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 ARHGAP29Q52LW3 1261 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 LRRTM3Q86VH5 581 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 GPIHBP1Q8IV16 184 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 TMEM86AQ8N2M4 240 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 PDCL2Q8N4E4 241 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 IQUBQ8NA54 791 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 BPIFB1Q8TDL5 484 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 RUBCNQ92622 972 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 SECISBP2LQ93073 1101 aaKnown RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 DHX58Q96C10 678 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 RSPRY1Q96DX4 576 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 FAM126AQ9BYI3 521 aaPredicted RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 FGFBP2Q9BYJ0 223 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 MTMR12Q9C0I1 747 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 CHRDQ9H2X0 955 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 LMAN1LQ9HAT1 526 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 PDE11AQ9HCR9 933 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 PRMT8Q9NR22 394 aaPredicted RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 THG1LQ9NWX6 298 aaKnown RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 ZSCAN32Q9NX65 697 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 DDX43Q9NXZ2 648 aaKnown RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 OBP2AQ9NY56 170 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 TFIP11Q9UBB9 837 aaKnown RBP10.54□□□□□ -0.72
VRK3-216ENST00000599342 L1RE1Q9UN81 338 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 SNX9Q9Y5X1 595 aa10.54□□□□□ -0.72
VRK3-216ENST00000599342 SCN1AP35498 2009 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 TCHHQ07283 1943 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 TICRRQ7Z2Z1 1910 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 ZNF233A6NK53 670 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 SHISA7A6NL88 538 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 EIF3DO15371 548 aaKnown RBP eCLIP10.53□□□□□ -0.72
VRK3-216ENST00000599342 PRPF40AO75400 957 aaKnown RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 TNNC2P02585 160 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 CSH1P0DML2 217 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 CSH2P0DML3 217 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 PCSK1P29120 753 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 AVPR1AP37288 418 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 LHX1P48742 406 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 CCR3P51677 355 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 NRLP54845 237 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 MLLT6P55198 1093 aaPredicted RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 PLCB2Q00722 1185 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 FZD5Q13467 585 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 INTS6LQ5JSJ4 861 aaKnown RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 FOXD4L5Q5VV16 416 aaPredicted RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 LMBRD2Q68DH5 695 aaPredicted RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 TSSK4Q6SA08 328 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 KIAA2013Q8IYS2 634 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 ADGRF2Q8IZF7 708 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 TOP6BLQ8N6T0 577 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 SPATA18Q8TC71 538 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 LEO1Q8WVC0 666 aaPredicted RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 FOXD4L4Q8WXT5 416 aaPredicted RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 SNX21Q969T3 373 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 ACBD6Q9BR61 282 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 PI4K2AQ9BTU6 479 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 MKNK1Q9BUB5 465 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 TRIM9Q9C026 710 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 MAGEF1Q9HAY2 307 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 IL21Q9HBE4 155 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 KIAA1586Q9HCI6 787 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 KBTBD4Q9NVX7 518 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 GDAP2Q9NXN4 497 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 NCDNQ9UBB6 729 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 UXTQ9UBK9 157 aaPredicted RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 MAGED2Q9UNF1 606 aaPredicted RBP10.53□□□□□ -0.72
VRK3-216ENST00000599342 VPS13AQ96RL7 3174 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 COL4A2P08572 1712 aa10.53□□□□□ -0.72
VRK3-216ENST00000599342 SPECC1L-ADORA2AF8WAN1 911 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms