RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZCCHC9Q8N567 271 aaKnown RBP16.07■□□□□ 0.16
UPF1-204ENST00000596842 ZNF606Q8WXB4 792 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 ATP6V0A1Q93050 837 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 FAXDC2Q96IV6 333 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 MFSD14AQ96MC6 490 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 PARVAQ9NVD7 372 aa16.07■□□□□ 0.16
UPF1-204ENST00000596842 KITP10721 976 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 HIRAP54198 1017 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 YWHAGP61981 247 aaKnown RBP eCLIP16.06■□□□□ 0.16
UPF1-204ENST00000596842 IRX4P78413 519 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 LAMB3Q13751 1172 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 NCOA4Q13772 614 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 EAPPQ56P03 285 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 TMC2Q8TDI7 906 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 C7orf43Q8WVR3 580 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 MAML1Q92585 1016 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 CNKSR1Q969H4 720 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 CCDC97Q96F63 343 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 COQ4Q9Y3A0 265 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 SPATA31A6Q5VVP1 1343 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 PEX10O60683 326 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 ASMTLO95671 621 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 CTCFP49711 727 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 ANKRD22Q5VYY1 191 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 OTOAQ7RTW8 1153 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 LRRC6Q86X45 466 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 VPS52Q8N1B4 723 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 FAM13CQ8NE31 585 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 MCUR1Q96AQ8 359 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 OSBPL1AQ9BXW6 950 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 RPAP3Q9H6T3 665 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 PXMP2Q9NR77 195 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 SLC17A7Q9P2U7 560 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 F5H423 210 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 CST8O60676 142 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 SETSIPP0DME0 302 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 KLF1Q13351 362 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 TMEM130Q8N3G9 435 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 CCDC33Q8N5R6 958 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 TCP10LQ8TDR4 215 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 FBXO6Q9NRD1 293 aaPredicted RBP16.06■□□□□ 0.16
UPF1-204ENST00000596842 TJP2Q9UDY2 1190 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 PRKAG3Q9UGI9 489 aa16.06■□□□□ 0.16
UPF1-204ENST00000596842 CCDC195A0A1B0GUA6 201 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 SRGAP2CP0DJJ0 459 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 PSMA2P25787 234 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 MARK3P27448 753 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 GDF10P55107 478 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 SNRNP48Q6IEG0 339 aaKnown RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 GPAT2Q6NUI2 795 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 EXD1Q8NHP7 514 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 ACTL9Q8TC94 416 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 ZNF75CPQ92670 426 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 PPP1R16BQ96T49 567 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 MARCOQ9UEW3 520 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 SCINQ9Y6U3 715 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 SCN9AQ15858 1988 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 ZNF541Q9H0D2 1346 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 PSTPIP1O43586 416 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 PFDN1O60925 122 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 CST3P01034 146 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 RCN2Q14257 317 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 FAXCQ5TGI0 409 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 SPOCD1Q6ZMY3 1216 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 RFWD2Q8NHY2 731 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 NAF1Q96HR8 494 aaKnown RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 SLITRK1Q96PX8 696 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 AVENQ9NQS1 362 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 XPNPEP1Q9NQW7 623 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 ARMCX1Q9P291 453 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 TROVE2P10155 538 aaKnown RBP eCLIP16.05■□□□□ 0.16
UPF1-204ENST00000596842 FGFR1P11362 822 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 OTUD4Q01804 1114 aaKnown RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 MAPK6Q16659 721 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 CDO1Q16878 200 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 RNF43Q68DV7 783 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 RSBN1LQ6PCB5 846 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 RFX6Q8HWS3 928 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 THNSL1Q8IYQ7 743 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 FAM71DQ8N9W8 422 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 FBXO36Q8NEA4 188 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 ZNF483Q8TF39 744 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 ABTB1Q969K4 478 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 RBM41Q96IZ5 413 aaKnown RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 MTMR12Q9C0I1 747 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 CYP26B1Q9NR63 512 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 PPP1R1BQ9UD71 204 aaPredicted RBP16.05■□□□□ 0.16
UPF1-204ENST00000596842 IP6K2Q9UHH9 426 aa16.05■□□□□ 0.16
UPF1-204ENST00000596842 EXTL3O43909 919 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 DCTN3O75935 186 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 VNN1O95497 513 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 GNAT1P11488 350 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 TNFSF9P41273 254 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 PTGER2P43116 358 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 TRPC3Q13507 836 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 ZACNQ401N2 412 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 RFWD3Q6PCD5 774 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 ARMCX6Q7L4S7 300 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 ENOSF1Q7L5Y1 443 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 GRAMD1AQ96CP6 724 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms