RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 TTC9BQ8N6N2 239 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 SPATA20Q8TB22 786 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 TMC2Q8TDI7 906 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 RSAD2Q8WXG1 361 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 ING5Q8WYH8 240 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 ZNF516Q92618 1163 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 SMARCE1Q969G3 411 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 DNAJC25Q9H1X3 360 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 SMOC2Q9H3U7 446 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 SLC27A5Q9Y2P5 690 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 HCN4Q9Y3Q4 1203 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 NUMBLQ9Y6R0 609 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 OBSL1O75147 1896 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 NUP210Q8TEM1 1887 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 PHACTR2O75167 634 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 CEBPBP17676 345 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 RPL13P26373 211 aaKnown RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 ATICP31939 592 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 BIRC3Q13489 604 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 TRPC3Q13507 836 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 EDRF1Q3B7T1 1238 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 MGAT5BQ3V5L5 792 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 ZNF658Q5TYW1 1059 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 TDRD10Q5VZ19 366 aaKnown RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 ITIH5Q86UX2 942 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 LRRTM3Q86VH5 581 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 SMYD4Q8IYR2 804 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 SLC44A3Q8N4M1 653 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 SYAP1Q96A49 352 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 PBXIP1Q96AQ6 731 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 SEPT5Q99719 369 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 ABI2Q9NYB9 513 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-206ENST00000595974 PCDHB5Q9Y5E4 795 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 PCDHA5Q9Y5H7 936 aa17.38■□□□□ 0.37
TRIM28-206ENST00000595974 CST3P01034 146 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-206ENST00000595974 SRFP11831 508 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 WARSP23381 471 aaKnown RBP17.37■□□□□ 0.37
TRIM28-206ENST00000595974 CCR2P41597 374 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 TNNC1P63316 161 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 ENPEPQ07075 957 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 VEPH1Q14D04 833 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 INTS8Q75QN2 995 aaKnown RBP17.37■□□□□ 0.37
TRIM28-206ENST00000595974 OSTM1Q86WC4 334 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 TMC8Q8IU68 726 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 SUGP1Q8IWZ8 645 aaKnown RBP17.37■□□□□ 0.37
TRIM28-206ENST00000595974 HS6ST3Q8IZP7 471 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 FBXL6Q8N531 539 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 KBTBD7Q8WVZ9 684 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 FGF14Q92915 247 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 PSMG2Q969U7 264 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 TCEAL4Q96EI5 215 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 MMS19Q96T76 1030 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 PKMYT1Q99640 499 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 VRTNQ9H8Y1 702 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 ABCB6Q9NP58 842 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 GREB1Q4ZG55 1949 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 MUC6Q6W4X9 2439 aa17.37■□□□□ 0.37
TRIM28-206ENST00000595974 IKBKBO14920 756 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 TACC1O75410 805 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 SOAT2O75908 522 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 AKAP3O75969 853 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 FGF19O95750 216 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 C4BPAP04003 597 aaKnown RBP17.36■□□□□ 0.37
TRIM28-206ENST00000595974 FAM163BP0C2L3 166 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 HAPLN1P10915 354 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-206ENST00000595974 MYL4P12829 197 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 ATF6P18850 670 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 ACAT1P24752 427 aaKnown RBP17.36■□□□□ 0.37
TRIM28-206ENST00000595974 MYL6P60660 151 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 WDR72Q3MJ13 1102 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 PARM1Q6UWI2 310 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 FAM186BQ8IYM0 893 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 SYT15Q9BQS2 421 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 LRRC3Q9BY71 257 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 XYLT2Q9H1B5 865 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 TMLHEQ9NVH6 421 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 CDH9Q9ULB4 789 aa17.36■□□□□ 0.37
TRIM28-206ENST00000595974 ZNF638Q14966 1978 aaKnown RBP17.36■□□□□ 0.37
TRIM28-206ENST00000595974 NARSO43776 548 aaKnown RBP17.35■□□□□ 0.37
TRIM28-206ENST00000595974 GADD45BO75293 160 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-206ENST00000595974 MOSPD3O75425 235 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 KRT13P13646 458 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 PSMC2P35998 433 aaKnown RBP17.35■□□□□ 0.37
TRIM28-206ENST00000595974 PRCPP42785 496 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 VAMP7P51809 220 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 DLG4P78352 724 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 ADAM9Q13443 819 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 NCOA4Q13772 614 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 MAPRE1Q15691 268 aaKnown RBP17.35■□□□□ 0.37
TRIM28-206ENST00000595974 ZNF699Q32M78 642 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 ZACNQ401N2 412 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 CFAP221Q4G0U5 840 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 FAM200AQ8TCP9 573 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 ERCC4Q92889 916 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-206ENST00000595974 MCRS1Q96EZ8 462 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 FUBP3Q96I24 572 aaKnown RBP eCLIP17.35■□□□□ 0.37
TRIM28-206ENST00000595974 MKNK1Q9BUB5 465 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 FBXL21Q9UKT6 434 aa17.35■□□□□ 0.37
TRIM28-206ENST00000595974 ECI2O75521 394 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 PPP1R2P41236 205 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms