RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TMEM174Q8WUU8 243 aa16.24■□□□□ 0.19
TRIM28-205ENST00000595028 RMDN1Q96DB5 314 aa16.24■□□□□ 0.19
TRIM28-205ENST00000595028 R3HCC1Q9Y3T6 440 aaKnown RBP16.24■□□□□ 0.19
TRIM28-205ENST00000595028 SNX9Q9Y5X1 595 aa16.24■□□□□ 0.19
TRIM28-205ENST00000595028 PDXKO00764 312 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 NARSO43776 548 aaKnown RBP16.23■□□□□ 0.19
TRIM28-205ENST00000595028 KIF20AO95235 890 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 TNNI1P19237 187 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 CCR2P41597 374 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 EPHA5P54756 1037 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 TSPY1Q01534 308 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 MTSS1LQ765P7 747 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 TRAPPC11Q7Z392 1133 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 ADGRF2Q8IZF7 708 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 FMR1NBQ8N0W7 255 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-205ENST00000595028 TMEM86AQ8N2M4 240 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 SLC44A3Q8N4M1 653 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 LEMD2Q8NC56 503 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 C2orf15Q8WU43 125 aaKnown RBP16.23■□□□□ 0.19
TRIM28-205ENST00000595028 FGF14Q92915 247 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 HPDLQ96IR7 371 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 ZNF512Q96ME7 567 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-205ENST00000595028 DNAJC25Q9H1X3 360 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 ASAH2Q9NR71 780 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 DMAC2Q9NW81 257 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 GDE1Q9NZC3 331 aa16.23■□□□□ 0.19
TRIM28-205ENST00000595028 NRG2O14511 850 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-205ENST00000595028 ZNF197O14709 1029 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 NR3C1P04150 777 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 SRFP11831 508 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 ALDH1A3P47895 512 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 EPHB3P54753 998 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 MYL7Q01449 175 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 FAM160A1Q05DH4 1040 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 SMARCB1Q12824 385 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 CYP4A22Q5TCH4 519 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 ASTLQ6HA08 431 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-205ENST00000595028 PARM1Q6UWI2 310 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 DGLUCYQ7Z3D6 616 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 LRRTM3Q86VH5 581 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 OSTM1Q86WC4 334 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 DCP1BQ8IZD4 617 aaKnown RBP16.22■□□□□ 0.19
TRIM28-205ENST00000595028 HS6ST3Q8IZP7 471 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 ENGASEQ8NFI3 743 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 ST13P5Q8NFI4 369 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-205ENST00000595028 PLEKHO2Q8TD55 490 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 TCEAL4Q96EI5 215 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 SEPT5Q99719 369 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-205ENST00000595028 DDX43Q9NXZ2 648 aaKnown RBP16.22■□□□□ 0.19
TRIM28-205ENST00000595028 CIZ1Q9ULV3 898 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-205ENST00000595028 SLC27A5Q9Y2P5 690 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 CACNA1GO43497 2377 aa16.22■□□□□ 0.19
TRIM28-205ENST00000595028 SOAT2O75908 522 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 MICAL2O94851 1124 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 MYL4P12829 197 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 CASP4P49662 377 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 PNOCQ13519 176 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 SNW1Q13573 536 aaKnown RBP16.21■□□□□ 0.19
TRIM28-205ENST00000595028 SOWAHAQ2M3V2 549 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 INTS6LQ5JSJ4 861 aaKnown RBP16.21■□□□□ 0.19
TRIM28-205ENST00000595028 POTEHQ6S545 545 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 LIMS2Q7Z4I7 341 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 TMC8Q8IU68 726 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 GUF1Q8N442 669 aaKnown RBP16.21■□□□□ 0.19
TRIM28-205ENST00000595028 SPPL2BQ8TCT7 592 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 MCRS1Q96EZ8 462 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 ACBD6Q9BR61 282 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 LRRC3Q9BY71 257 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 TRAF3IP3Q9Y228 551 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 CEP250Q9BV73 2442 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 PTPRDP23468 1912 aa16.21■□□□□ 0.19
TRIM28-205ENST00000595028 NUP210Q8TEM1 1887 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 ACACBO00763 2458 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 LRRIQ3A6PVS8 624 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 GABRDO14764 452 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 CALUO43852 315 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 MOSPD3O75425 235 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 ATF6P18850 670 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 ACAT1P24752 427 aaKnown RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 LHX1P48742 406 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 TUFMP49411 452 aaKnown RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 CDR1P51861 262 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 NFE2Q16621 373 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 MGAT5BQ3V5L5 792 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 DPH6Q7L8W6 267 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 ITIH5Q86UX2 942 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 PARD3BQ8TEW8 1205 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 KBTBD7Q8WVZ9 684 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 ZNF516Q92618 1163 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 PSMG2Q969U7 264 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 PKMYT1Q99640 499 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 KXD1Q9BQD3 176 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 RPP25Q9BUL9 199 aaKnown RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 SLC2A4RGQ9NR83 387 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 TMLHEQ9NVH6 421 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 ABI2Q9NYB9 513 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-205ENST00000595028 FBXL21Q9UKT6 434 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 MAPK8IP1Q9UQF2 711 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 ASB3Q9Y575 518 aa16.2■□□□□ 0.18
TRIM28-205ENST00000595028 OBSL1O75147 1896 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms