RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 RNF135Q8IUD6 432 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 DCP1BQ8IZD4 617 aaKnown RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 TTC9BQ8N6N2 239 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 GPT2Q8TD30 523 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 C2orf15Q8WU43 125 aaKnown RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 KHSRPQ92945 711 aaKnown RBP eCLIP15.6■□□□□ 0.09
VRK3-206ENST00000594090 CEP63Q96MT8 703 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 MRPL45Q9BRJ2 306 aaKnown RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 MMRN2Q9H8L6 949 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 DNMT3BQ9UBC3 853 aaKnown RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 HSFX1Q9UBD0 423 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 NXF1Q9UBU9 619 aaKnown RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 N4BP1O75113 896 aaKnown RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 TACC1O75410 805 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 HLA-DRAP01903 254 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 GTF2H1P32780 548 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 PABPC1LQ4VXU2 614 aaKnown RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 DCAF17Q5H9S7 520 aaPredicted RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 ZNF667Q5HYK9 610 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 ZDHHC14Q8IZN3 488 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 SPPL2BQ8TCT7 592 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 ELMO3Q96BJ8 720 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 ACSF2Q96CM8 615 aaPredicted RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 PKMYT1Q99640 499 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 TMEM8AQ9HCN3 771 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 TMLHEQ9NVH6 421 aa15.6■□□□□ 0.09
VRK3-206ENST00000594090 ABI2Q9NYB9 513 aaPredicted RBP15.6■□□□□ 0.09
VRK3-206ENST00000594090 DOCK6Q96HP0 2047 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 NOTCH4Q99466 2003 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 ASS1P00966 412 aaKnown RBP15.59■□□□□ 0.09
VRK3-206ENST00000594090 FSHRP23945 695 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 LMO2P25791 158 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 CDR1P51861 262 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 STX17P56962 302 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 PLD1Q13393 1074 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 NFE2Q16621 373 aaPredicted RBP15.59■□□□□ 0.09
VRK3-206ENST00000594090 SGSM1Q2NKQ1 1148 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 ELMOD1Q8N336 334 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 PLCD3Q8N3E9 789 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 TAS1R2Q8TE23 839 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 TAF4BQ92750 862 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 MYADMQ96S97 322 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 SYT15Q9BQS2 421 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 SMYD3Q9H7B4 428 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 CEP72Q9P209 647 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 ARMCX3Q9UH62 379 aaPredicted RBP15.59■□□□□ 0.09
VRK3-206ENST00000594090 MUTYHQ9UIF7 546 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 SLC27A5Q9Y2P5 690 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 NME7Q9Y5B8 376 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 PCDHB5Q9Y5E4 795 aa15.59■□□□□ 0.09
VRK3-206ENST00000594090 STX10O60499 249 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 SOAT2O75908 522 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 RHOP08100 348 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 FAM163BP0C2L3 166 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 PTPN2P17706 415 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 GBP2P32456 591 aaPredicted RBP15.58■□□□□ 0.08
VRK3-206ENST00000594090 ALDH1A3P47895 512 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 MXI1P50539 228 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 PSMC1P62191 440 aaKnown RBP15.58■□□□□ 0.08
VRK3-206ENST00000594090 CCDC142Q17RM4 750 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 MGAT5BQ3V5L5 792 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 TCERG1LQ5VWI1 586 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 KRT39Q6A163 491 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 SPOPLQ6IQ16 392 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 SCARA5Q6ZMJ2 495 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 FRMD5Q7Z6J6 570 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 FILIP1Q7Z7B0 1213 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 MLKLQ8NB16 471 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 SEPT5Q99719 369 aaPredicted RBP15.58■□□□□ 0.08
VRK3-206ENST00000594090 CORO1BQ9BR76 489 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 PI4K2AQ9BTU6 479 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 IMPG2Q9BZV3 1241 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 SDCBP2Q9H190 292 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 DNAJC25Q9H1X3 360 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 SNX25Q9H3E2 840 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 AVENQ9NQS1 362 aaPredicted RBP15.58■□□□□ 0.08
VRK3-206ENST00000594090 GTF3C4Q9UKN8 822 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 CDH9Q9ULB4 789 aa15.58■□□□□ 0.08
VRK3-206ENST00000594090 DOCK8Q8NF50 2099 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 MYBPHLA2RUH7 354 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 ATP2C2O75185 946 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 HAPLN1P10915 354 aaPredicted RBP15.57■□□□□ 0.08
VRK3-206ENST00000594090 P4HA1P13674 534 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 RAP1GAPP47736 663 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 TUFMP49411 452 aaKnown RBP15.57■□□□□ 0.08
VRK3-206ENST00000594090 NOP14P78316 857 aaKnown RBP15.57■□□□□ 0.08
VRK3-206ENST00000594090 SLC5A9Q2M3M2 681 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 CCDC40Q4G0X9 1142 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 IQCEQ6IPM2 695 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 FAM171BQ6P995 826 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 OR6B3Q8NGW1 331 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 ITFG1Q8TB96 612 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 ZNF512Q96ME7 567 aaPredicted RBP15.57■□□□□ 0.08
VRK3-206ENST00000594090 METTL14Q9HCE5 456 aaKnown RBP15.57■□□□□ 0.08
VRK3-206ENST00000594090 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.57■□□□□ 0.085e-6■■■■■ 65.2
VRK3-206ENST00000594090 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.57■□□□□ 0.08
VRK3-206ENST00000594090 EPS15L1Q9UBC2 864 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 RWDD2AQ9UIY3 292 aa15.57■□□□□ 0.08
VRK3-206ENST00000594090 PI4K2BG5E9Z4 385 aa15.56■□□□□ 0.08
VRK3-206ENST00000594090 DCXO43602 365 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms