RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 COPS2P61201 443 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 ADAM17P78536 824 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 DMTNQ08495 405 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 INCA1Q0VD86 236 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 KIZQ2M2Z5 673 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 DCUN1D2Q6PH85 259 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 CCDC137Q6PK04 289 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 NIPA2Q8N8Q9 360 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 TSEN2Q8NCE0 465 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 CXorf38Q8TB03 319 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 FNIP1Q8TF40 1166 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 SLCO2A1Q92959 643 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 DDX27Q96GQ7 796 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 TMEM176AQ96HP8 235 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 RBM41Q96IZ5 413 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 HINFPQ9BQA5 517 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 FAM49AQ9H0Q0 323 aaPredicted RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 ERVK-5Q9HDB9 667 aa11.93□□□□□ -0.5
LIG3-204ENST00000585740 DDX56Q9NY93 547 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 MTRF1LQ9UGC7 380 aaKnown RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 BARX2Q9UMQ3 279 aaPredicted RBP11.93□□□□□ -0.5
LIG3-204ENST00000585740 TCRBV5S1A1TA0A578 114 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 CSDE1O75534 798 aaKnown RBP11.92□□□□□ -0.5
LIG3-204ENST00000585740 ECEL1O95672 775 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 IGHA2P01877 340 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 HMGCRP04035 888 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 FAM153BP0C7A2 387 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 RARAP10276 462 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 ECHS1P30084 290 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 GUCY2FP51841 1108 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 ZNF268Q14587 947 aaPredicted RBP11.92□□□□□ -0.5
LIG3-204ENST00000585740 SIX1Q15475 284 aaPredicted RBP11.92□□□□□ -0.5
LIG3-204ENST00000585740 CNGA2Q16280 664 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 FAM153CQ494X1 144 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 ZNF394Q53GI3 561 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 SGO2Q562F6 1265 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 PRAMEF19Q5SWL8 479 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 ADAT2Q7Z6V5 191 aaKnown RBP11.92□□□□□ -0.5
LIG3-204ENST00000585740 CCDC105Q8IYK2 499 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 RCOR2Q8IZ40 523 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 IQCKQ8N0W5 287 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 LRRC52Q8N7C0 313 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 SLC4A11Q8NBS3 891 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 TFAP2BQ92481 460 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 C18orf8Q96DM3 657 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 SNX27Q96L92 541 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 ZIM3Q96PE6 472 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 FMO2Q99518 471 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 CELF4Q9BZC1 486 aaKnown RBP11.92□□□□□ -0.5
LIG3-204ENST00000585740 TRIM6Q9C030 488 aaPredicted RBP11.92□□□□□ -0.5
LIG3-204ENST00000585740 SMYD3Q9H7B4 428 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 FLRT1Q9NZU1 646 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 FAM153AQ9UHL3 310 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 ADAM21Q9UKJ8 722 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 GJD2Q9UKL4 321 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 UBQLN1Q9UMX0 589 aaKnown RBP11.92□□□□□ -0.5
LIG3-204ENST00000585740 NR2E1Q9Y466 385 aa11.92□□□□□ -0.5
LIG3-204ENST00000585740 SIGLEC16A6NMB1 481 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 A6NNZ2 444 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 MEFVO15553 781 aaPredicted RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 DUSP11O75319 330 aaKnown RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 CD4P01730 458 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 SETSIPP0DME0 302 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 HOXA11P31270 313 aaPredicted RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 CYP2C19P33261 490 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 PTPN7P35236 360 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 SSR1P43307 286 aaKnown RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 RAP1GAPP47736 663 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 CRYBB1P53674 252 aaPredicted RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 SNX16P57768 344 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 LMNB2Q03252 620 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 ACAP1Q15027 740 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 FSCN1Q16658 493 aaKnown RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 TUBB8Q3ZCM7 444 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 ODF2Q5BJF6 829 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 PPP1R15BQ5SWA1 713 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 MFSD14CQ5VZR4 134 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 SCARA3Q6AZY7 606 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 AADACL2Q6P093 401 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 TAF2Q6P1X5 1199 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 DENND1BQ6P3S1 775 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 ZNF771Q7L3S4 317 aaPredicted RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 PHLDB2Q86SQ0 1253 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 CPNE8Q86YQ8 564 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 CCDC50Q8IVM0 306 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 WDTC1Q8N5D0 677 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 FAM76AQ8TAV0 307 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 IPO4Q8TEX9 1081 aaKnown RBP11.91□□□□□ -0.5
LIG3-204ENST00000585740 OSMRQ99650 979 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 TRIM51Q9BSJ1 452 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 ELOVL4Q9GZR5 314 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 SDCBP2Q9H190 292 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 DPH5Q9H2P9 285 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 PLEKHA4Q9H4M7 779 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 SPC25Q9HBM1 224 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 CNTN3Q9P232 1028 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIG3-204ENST00000585740 USTQ9Y2C2 406 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 TRIM17Q9Y577 477 aa11.91□□□□□ -0.5
LIG3-204ENST00000585740 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms