RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZBED2Q9BTP6 218 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 GPR62Q9BZJ7 368 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 SNX25Q9H3E2 840 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 EPN1Q9Y6I3 576 aaPredicted RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 NT5C1B-RDH14C9J2C7 533 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 DDX3XO00571 662 aaKnown RBP eCLIP17.18■□□□□ 0.341e-15■■■□□ 17.7
SS18-211ENST00000578954 TLL1O43897 1013 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 NDUFA10O95299 355 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 LMO2P25791 158 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 TKTP29401 623 aaKnown RBP17.18■□□□□ 0.34
SS18-211ENST00000578954 PPM1AP35813 382 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 SLC18A3Q16572 532 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 VPS36Q86VN1 386 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 ZNF606Q8WXB4 792 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 TFAP2BQ92481 460 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 TNIP3Q96KP6 325 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 DNAI2Q9GZS0 605 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 AAASQ9NRG9 546 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 DDX43Q9NXZ2 648 aaKnown RBP17.18■□□□□ 0.34
SS18-211ENST00000578954 CDH9Q9ULB4 789 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 PCDHGC3Q9UN70 934 aa17.18■□□□□ 0.34
SS18-211ENST00000578954 TIMM13Q9Y5L4 95 aaPredicted RBP17.18■□□□□ 0.34
SS18-211ENST00000578954 O00370 1275 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 HCRTO43612 131 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 MMEP08473 750 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 BRD2P25440 801 aaKnown RBP17.17■□□□□ 0.34
SS18-211ENST00000578954 PCSK1P29120 753 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 BMP8BP34820 402 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 YWHAHQ04917 246 aaPredicted RBP17.17■□□□□ 0.34
SS18-211ENST00000578954 STILQ15468 1287 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 SPOUT1Q5T280 376 aaKnown RBP17.17■□□□□ 0.34
SS18-211ENST00000578954 ARHGAP17Q68EM7 881 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 OVOS1Q6IE37 1185 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 TRIM72Q6ZMU5 477 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 GLYCTKQ8IVS8 523 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 PKMYT1Q99640 499 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 ACBD6Q9BR61 282 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 HERC2P3Q9BVR0 1158 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 VN1R3Q9BXE9 311 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 DPEP3Q9H4B8 488 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 DEF6Q9H4E7 631 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 SPG21Q9NZD8 308 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 STK39Q9UEW8 545 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 ADAMTS1Q9UHI8 967 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 PYCARDQ9ULZ3 195 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 ZKSCAN5Q9Y2L8 839 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 ATP8B3O60423 1300 aa17.17■□□□□ 0.34
SS18-211ENST00000578954 A0A087X0T9 212 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 H0YGN5 161 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 ZNF263O14978 683 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 THAP12O43422 761 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 MED7O43513 233 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 AKR1B10O60218 316 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 CALCAP01258 141 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 CYP1A1P04798 512 aaPredicted RBP17.16■□□□□ 0.34
SS18-211ENST00000578954 FAM228BP0C875 321 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 TNFAIP3P21580 790 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 CDH5P33151 784 aaPredicted RBP17.16■□□□□ 0.34
SS18-211ENST00000578954 PLCB3Q01970 1234 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 ORC1Q13415 861 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 CNGA2Q16280 664 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 SGO2Q562F6 1265 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 INTS6LQ5JSJ4 861 aaKnown RBP17.16■□□□□ 0.34
SS18-211ENST00000578954 FAM171A1Q5VUB5 890 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 KIAA0319Q5VV43 1072 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 LCLAT1Q6UWP7 414 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 DDX53Q86TM3 631 aaKnown RBP17.16■□□□□ 0.34
SS18-211ENST00000578954 ACOT1Q86TX2 421 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 GPR65Q8IYL9 337 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 B3GALNT2Q8NCR0 500 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 TMEM169Q96HH4 297 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 PCDHB18PQ96TA0 734 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 SYT15Q9BQS2 421 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 UBE2OQ9C0C9 1292 aaKnown RBP17.16■□□□□ 0.34
SS18-211ENST00000578954 CHST7Q9NS84 486 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.16■□□□□ 0.34
SS18-211ENST00000578954 NAGPAQ9UK23 515 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.16■□□□□ 0.34
SS18-211ENST00000578954 RWDD3Q9Y3V2 267 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 PCDHB12Q9Y5F1 795 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 ADGRG1Q9Y653 693 aa17.16■□□□□ 0.34
SS18-211ENST00000578954 LCHNA4D1U4 455 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 TBC1D4O60343 1298 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 LSM8O95777 96 aaKnown RBP17.15■□□□□ 0.34
SS18-211ENST00000578954 SOD2P04179 222 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 PDGFRBP09619 1106 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 GZMAP12544 262 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 CD19P15391 556 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 GFPT1Q06210 699 aaPredicted RBP17.15■□□□□ 0.34
SS18-211ENST00000578954 RTP2Q5QGT7 225 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 VARS2Q5ST30 1063 aaKnown RBP17.15■□□□□ 0.34
SS18-211ENST00000578954 TAF3Q5VWG9 929 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 FAM171BQ6P995 826 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 TOGARAM2Q6ZUX3 1019 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 PALB2Q86YC2 1186 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 THEM5Q8N1Q8 247 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 OR10T2Q8NGX3 314 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 HEXIM2Q96MH2 286 aaKnown RBP17.15■□□□□ 0.34
SS18-211ENST00000578954 TTPALQ9BTX7 342 aa17.15■□□□□ 0.34
SS18-211ENST00000578954 OXCT2Q9BYC2 517 aaPredicted RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms