RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SLC39A12Q504Y0 691 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 WSCD1Q658N2 575 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 Q6ZS52 159 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 DYMQ7RTS9 669 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 BRAPQ7Z569 592 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 USP37Q86T82 979 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 SFR1Q86XK3 245 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 STKLD1Q8NE28 680 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 SPDYE1Q8NFV5 336 aaPredicted RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 FAM212AQ96EL1 285 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 CLIC6Q96NY7 704 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 PKMYT1Q99640 499 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 SLC46A2Q9BY10 475 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 GPR88Q9GZN0 384 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 SMG9Q9H0W8 520 aaKnown RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 ASB7Q9H672 318 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 RTN4Q9NQC3 1192 aaKnown RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 GTSE1Q9NYZ3 720 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 AGO2Q9UKV8 859 aaKnown RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 MRPS17Q9Y2R5 130 aaKnown RBP7.27□□□□□ -1.25
VPS53-213ENST00000572334 ASB3Q9Y575 518 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 MYH10P35580 1976 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 PI4KAP42356 2102 aa7.27□□□□□ -1.25
VPS53-213ENST00000572334 FRMD3A2A2Y4 597 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 SPECC1L-ADORA2AF8WAN1 911 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 CYB561D2O14569 222 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 HRO43593 1189 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 HCRTO43612 131 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 TADA3O75528 432 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 PAPSS2O95340 614 aaPredicted RBP7.26□□□□□ -1.25
VPS53-213ENST00000572334 BMP15O95972 392 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 F11P03951 625 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 HAPLN1P10915 354 aaPredicted RBP7.26□□□□□ -1.25
VPS53-213ENST00000572334 ALDH1A3P47895 512 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 GPR15P49685 360 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 MCM2P49736 904 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 TAF6P49848 677 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 ATXN1P54253 815 aaKnown RBP7.26□□□□□ -1.25
VPS53-213ENST00000572334 SRSF5Q13243 272 aaKnown RBP7.26□□□□□ -1.25
VPS53-213ENST00000572334 GPR158Q5T848 1215 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 ADALQ6DHV7 355 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 PKN3Q6P5Z2 889 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 DGLUCYQ7Z3D6 616 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 OSTM1Q86WC4 334 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 TTC8Q8TAM2 541 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 GIPC2Q8TF65 315 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 ATRIPQ8WXE1 791 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 E2F7Q96AV8 911 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 HINFPQ9BQA5 517 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 FAM83CQ9BQN1 747 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 PYM1Q9BRP8 204 aaKnown RBP7.26□□□□□ -1.25
VPS53-213ENST00000572334 IER2Q9BTL4 223 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 FAM126AQ9BYI3 521 aaPredicted RBP7.26□□□□□ -1.25
VPS53-213ENST00000572334 ATXN3LQ9H3M9 355 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 ZHX3Q9H4I2 956 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 TASP1Q9H6P5 420 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 HPS4Q9NQG7 708 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 DPP3Q9NY33 737 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 OBP2AQ9NY56 170 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 SIX4Q9UIU6 781 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 CCL26Q9Y258 94 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 SRPRBQ9Y5M8 271 aaKnown RBP7.26□□□□□ -1.25
VPS53-213ENST00000572334 THADAQ6YHU6 1953 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 PTPRJQ12913 1337 aa7.26□□□□□ -1.25
VPS53-213ENST00000572334 CEP192Q8TEP8 1941 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 TNRC6BQ9UPQ9 1833 aaKnown RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 KPNA7A9QM74 516 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 CHURC1-FNTBB4DL54 471 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 TBCAO75347 108 aaKnown RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 KRT18P05783 430 aaKnown RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 PAX3P23760 479 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 HOXD13P35453 343 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 CXCL12P48061 93 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 FNTBP49356 437 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 TUFMP49411 452 aaKnown RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 CCR3P51677 355 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 CLCN6P51797 869 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 NLRP12P59046 1061 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 PON2Q15165 354 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 LPAL2Q16609 132 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 MGAT5BQ3V5L5 792 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 ARHGAP29Q52LW3 1261 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 SDHAF4Q5VUM1 108 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 NAIF1Q69YI7 327 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 SLFN12LQ6IEE8 588 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 ARMCX5Q6P1M9 558 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 LIMS2Q7Z4I7 341 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 MTERF4Q7Z6M4 381 aaKnown RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 RALGPS2Q86X27 583 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 BRSK2Q8IWQ3 736 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 PDCL2Q8N4E4 241 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 SPEM1Q8N4L4 309 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 C1orf127Q8N9H9 656 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 GLIS3Q8NEA6 775 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 SPPL2BQ8TCT7 592 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 BPIFB1Q8TDL5 484 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 POMGNT1Q8WZA1 660 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 USP13Q92995 863 aaPredicted RBP7.25□□□□□ -1.25
VPS53-213ENST00000572334 HVCN1Q96D96 273 aa7.25□□□□□ -1.25
VPS53-213ENST00000572334 SAAL1Q96ER3 474 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms