RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ZFYVE19Q96K21 471 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 STRA6Q9BX79 667 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 TASP1Q9H6P5 420 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 GTSE1Q9NYZ3 720 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 CLIC4Q9Y696 253 aa16.12■□□□□ 0.17
CLN3-236ENST00000568558 HELZP42694 1942 aaKnown RBP16.11■□□□□ 0.17
CLN3-236ENST00000568558 ATG2BQ96BY7 2078 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 KIAA1549LQ6ZVL6 1849 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 IL18RAPO95256 599 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 TGM1P22735 817 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 SMARCB1Q12824 385 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 POSTNQ15063 836 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 WSCD1Q658N2 575 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 LRRTM3Q86VH5 581 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 TTC8Q8TAM2 541 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 BPIFB1Q8TDL5 484 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 DNAJC19Q96DA6 116 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 ZNF560Q96MR9 790 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 GCNAQ96QF7 691 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 RBM12Q9NTZ6 932 aaKnown RBP16.11■□□□□ 0.17
CLN3-236ENST00000568558 SEL1LQ9UBV2 794 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 CCDC39Q9UFE4 941 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 FBXO2Q9UK22 296 aaPredicted RBP16.11■□□□□ 0.17
CLN3-236ENST00000568558 GMEB2Q9UKD1 530 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 MYO16Q9Y6X6 1858 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 SPAG17Q6Q759 2223 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 EML5Q05BV3 1969 aa16.11■□□□□ 0.17
CLN3-236ENST00000568558 MYMKA6NI61 221 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 KPNA7A9QM74 516 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 PAPSS2O95340 614 aaPredicted RBP16.1■□□□□ 0.17
CLN3-236ENST00000568558 HAPLN1P10915 354 aaPredicted RBP16.1■□□□□ 0.17
CLN3-236ENST00000568558 PLCB2Q00722 1185 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 KCNA1Q09470 495 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 CUL4AQ13619 759 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 DGKKQ5KSL6 1271 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 Q6ZS52 159 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 CELF5Q8N6W0 485 aaKnown RBP16.1■□□□□ 0.17
CLN3-236ENST00000568558 GIPC2Q8TF65 315 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 SLC46A2Q9BY10 475 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 MRPL44Q9H9J2 332 aaKnown RBP16.1■□□□□ 0.17
CLN3-236ENST00000568558 PARD6AQ9NPB6 346 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 ABI2Q9NYB9 513 aaPredicted RBP16.1■□□□□ 0.17
CLN3-236ENST00000568558 RAB23Q9ULC3 237 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 EXOC7Q9UPT5 735 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 SRPRBQ9Y5M8 271 aaKnown RBP16.1■□□□□ 0.17
CLN3-236ENST00000568558 NCOR2Q9Y618 2525 aa16.1■□□□□ 0.17
CLN3-236ENST00000568558 PTPRDP23468 1912 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 K7ESF4 209 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 GAP43P17677 238 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 PDCP20941 246 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 SDHBP21912 280 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 PNPLA4P41247 253 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 WNT7BP56706 349 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 LMNB2Q03252 620 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 TNK2Q07912 1038 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 DMWDQ09019 674 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 CCINQ13939 588 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 PON2Q15165 354 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 TAF12Q16514 161 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 LPAL2Q16609 132 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 L1TD1Q5T7N2 865 aaKnown RBP16.09■□□□□ 0.17
CLN3-236ENST00000568558 RRAGBQ5VZM2 374 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 LAIR1Q6GTX8 287 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 BRSK2Q8IWQ3 736 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 DCP1BQ8IZD4 617 aaKnown RBP16.09■□□□□ 0.17
CLN3-236ENST00000568558 ZSWIM2Q8NEG5 633 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 CLIC6Q96NY7 704 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 ACCSQ96QU6 501 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 FAM213AQ9BRX8 229 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 SMG9Q9H0W8 520 aaKnown RBP16.09■□□□□ 0.17
CLN3-236ENST00000568558 ZMYM5Q9UJ78 669 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 USP18Q9UMW8 372 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 PCDHB5Q9Y5E4 795 aa16.09■□□□□ 0.17
CLN3-236ENST00000568558 PRR5-ARHGAP8B1AHC4 643 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 CHURC1-FNTBB4DL54 471 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 ITGB3P05106 788 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 HMGA1P17096 107 aaKnown RBP16.08■□□□□ 0.16
CLN3-236ENST00000568558 POLR2BP30876 1174 aaKnown RBP16.08■□□□□ 0.16
CLN3-236ENST00000568558 TXLNAP40222 546 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 FNTBP49356 437 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 ARHGAP8P85298 464 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 RESTQ13127 1097 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 FAM173BQ6P4H8 233 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 PRR23BQ6ZRT6 265 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 SV2BQ7L1I2 683 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 TMEM150AQ86TG1 271 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 CMTM8Q8IZV2 173 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 SAAL1Q96ER3 474 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 OLFML3Q9NRN5 406 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 TMLHEQ9NVH6 421 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 C2orf42Q9NWW7 574 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 TBC1D7Q9P0N9 293 aa16.08■□□□□ 0.16
CLN3-236ENST00000568558 GCNT3O95395 438 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 LDHAP00338 332 aaKnown RBP16.07■□□□□ 0.16
CLN3-236ENST00000568558 F11P03951 625 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 GARTP22102 1010 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 CASP5P51878 434 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 ATXN1P54253 815 aaKnown RBP16.07■□□□□ 0.16
CLN3-236ENST00000568558 NLRP12P59046 1061 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 TFAMQ00059 246 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms