RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CEP295Q9C0D2 2601 aa15□□□□□ -0.01
CLN3-235ENST00000568497 ASPMQ8IZT6 3477 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 TRIM49BA6NDI0 452 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 SOBPA7XYQ1 873 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 RHOBTB3O94955 611 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 BMP6P22004 513 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 GARTP22102 1010 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 MCM4P33991 863 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 PMS1P54277 932 aaKnown RBP14.99□□□□□ -0.01
CLN3-235ENST00000568497 ARPP19P56211 112 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 ALCAMQ13740 583 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 BMT2Q1RMZ1 405 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 MAMSTRQ6ZN01 415 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 MTMR12Q9C0I1 747 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 GZF1Q9H116 711 aaPredicted RBP14.99□□□□□ -0.01
CLN3-235ENST00000568497 CHST7Q9NS84 486 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 LMBRD1Q9NUN5 540 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 FNIP2Q9P278 1114 aa14.99□□□□□ -0.01
CLN3-235ENST00000568497 HCRTO43612 131 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 DLATP10515 647 aaKnown RBP14.98□□□□□ -0.01
CLN3-235ENST00000568497 TDGF1P13385 188 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 POLR2BP30876 1174 aaKnown RBP14.98□□□□□ -0.01
CLN3-235ENST00000568497 PRCPP42785 496 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 CCR3P51677 355 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 UBE2HP62256 183 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 FZD5Q13467 585 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 PPM1LQ5SGD2 360 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 LIN9Q5TKA1 542 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 SPATA1Q5VX52 437 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 C9orf57Q5W0N0 161 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 CEP135Q66GS9 1140 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 KLHL10Q6JEL2 608 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 STXBP4Q6ZWJ1 553 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 LNX1Q8TBB1 728 aaPredicted RBP14.98□□□□□ -0.01
CLN3-235ENST00000568497 SMARCE1Q969G3 411 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 DDX27Q96GQ7 796 aaKnown RBP14.98□□□□□ -0.01
CLN3-235ENST00000568497 CHRDQ9H2X0 955 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 DPP3Q9NY33 737 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 UBQLN1Q9UMX0 589 aaKnown RBP14.98□□□□□ -0.01
CLN3-235ENST00000568497 NUB1Q9Y5A7 615 aa14.98□□□□□ -0.01
CLN3-235ENST00000568497 SF3B1O75533 1304 aaKnown RBP eCLIP14.97□□□□□ -0.013e-9■■■■■ 164.7
CLN3-235ENST00000568497 CCL16O15467 120 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 NR3C1P04150 777 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 ITGB3P05106 788 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 OR4Q2P0C623 313 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 DLG4P78352 724 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 SRSF5Q13243 272 aaKnown RBP14.97□□□□□ -0.01
CLN3-235ENST00000568497 USP41Q3LFD5 358 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 CEP68Q76N32 757 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 C1orf127Q8N9H9 656 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 ITFG1Q8TB96 612 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 GPT2Q8TD30 523 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 ING5Q8WYH8 240 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 ZNF516Q92618 1163 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 TMEM209Q96SK2 561 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 CLSTN3Q9BQT9 956 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 IER2Q9BTL4 223 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 TTPALQ9BTX7 342 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 PLEKHA5Q9HAU0 1116 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 SLC38A7Q9NVC3 462 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 SIX4Q9UIU6 781 aa14.97□□□□□ -0.01
CLN3-235ENST00000568497 UBE4BO95155 1302 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 F5P12259 2224 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 ZNF233A6NK53 670 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 CHURC1-FNTBB4DL54 471 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 EXOC3O60645 756 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 XYLBO75191 536 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 KRT19P08727 400 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 HNRNPA1P09651 372 aaKnown RBP eCLIP14.96□□□□□ -0.01
CLN3-235ENST00000568497 FNTBP49356 437 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 STX17P56962 302 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 CREMQ03060 361 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 CYP24A1Q07973 514 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 KCNB1Q14721 858 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 SF3A2Q15428 464 aaKnown RBP14.96□□□□□ -0.01
CLN3-235ENST00000568497 PSMD5Q16401 504 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 SNRNP35Q16560 246 aaKnown RBP14.96□□□□□ -0.01
CLN3-235ENST00000568497 CCDC142Q17RM4 750 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 HS2ST1Q7LGA3 356 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 XXYLT1Q8NBI6 393 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 BEST2Q8NFU1 509 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 MMRN2Q9H8L6 949 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 AGAP1Q9UPQ3 857 aa14.96□□□□□ -0.01
CLN3-235ENST00000568497 KCNK5O95279 499 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 C8AP07357 584 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 TRIM49P0CI25 452 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 TRIM49CP0CI26 452 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 FGFR3P22607 806 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 LRPAP1P30533 357 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 OR1D2P34982 312 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 LIMK1P53667 647 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 SATB1Q01826 763 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 BFSP1Q12934 665 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 PSMD2Q13200 908 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 CCDC6Q16204 474 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 HEATR6Q6AI08 1181 aaKnown RBP14.95□□□□□ -0.02
CLN3-235ENST00000568497 DSTYKQ6XUX3 929 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 NPAS3Q8IXF0 933 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 CSGALNACT2Q8N6G5 542 aa14.95□□□□□ -0.02
CLN3-235ENST00000568497 CXorf38Q8TB03 319 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms