RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PAEPP09466 180 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 RARGP13631 454 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 CALCOCO2Q13137 446 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 SKIDA1Q1XH10 827 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 DENND2CQ68D51 928 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 SYDE1Q6ZW31 735 aaPredicted RBP21.45■■□□□ 1.02
CLN3-230ENST00000568076 BCAS4Q8TDM0 211 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 FAXDC2Q96IV6 333 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 SLITRK1Q96PX8 696 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 VRTNQ9H8Y1 702 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 SLC12A6Q9UHW9 1150 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 CAND2O75155 1236 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 CILPO75339 1184 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 KRT10P13645 584 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 POLR2BP30876 1174 aaKnown RBP21.45■■□□□ 1.02
CLN3-230ENST00000568076 LSP1P33241 339 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 MDH1P40925 334 aaKnown RBP21.45■■□□□ 1.02
CLN3-230ENST00000568076 ACVR2BQ13705 512 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 SLMAPQ14BN4 828 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 LRRC38Q5VT99 294 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 MFSD7Q6UXD7 560 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 RCOR2Q8IZ40 523 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 OR6J1Q8NGC5 347 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 GRK7Q8WTQ7 553 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 CCDC114Q96M63 670 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 TINF2Q9BSI4 451 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 HOMER3Q9NSC5 361 aa21.45■■□□□ 1.02
CLN3-230ENST00000568076 A0A1B0GUA9 196 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 RIPK2O43353 540 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 MED7O43513 233 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 ATICP31939 592 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 MAGOHP61326 146 aaKnown RBP21.44■■□□□ 1.02
CLN3-230ENST00000568076 TAP1Q03518 808 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 TMEM132DQ14C87 1099 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 NIPA2Q8N8Q9 360 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 TLCD1Q96CP7 247 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 SCLT1Q96NL6 688 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 GBA2Q9HCG7 927 aaPredicted RBP21.44■■□□□ 1.02
CLN3-230ENST00000568076 RSPH14Q9UHP6 348 aa21.44■■□□□ 1.02
CLN3-230ENST00000568076 GAS8O95995 478 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 KRT1P04264 644 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 ITIH2P19823 946 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 RFC1P35251 1148 aaPredicted RBP21.43■■□□□ 1.02
CLN3-230ENST00000568076 CHKAP35790 457 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 PPARDQ03181 441 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 PTPN11Q06124 597 aaPredicted RBP21.43■■□□□ 1.02
CLN3-230ENST00000568076 PIGHQ14442 188 aaPredicted RBP21.43■■□□□ 1.02
CLN3-230ENST00000568076 SPRYD7Q5W111 196 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 KAZNQ674X7 775 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 PLEKHH3Q7Z736 793 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 JOSD2Q8TAC2 188 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 UHMK1Q8TAS1 419 aaKnown RBP21.43■■□□□ 1.02
CLN3-230ENST00000568076 ACSF2Q96CM8 615 aaPredicted RBP21.43■■□□□ 1.02
CLN3-230ENST00000568076 SNF8Q96H20 258 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 RBM41Q96IZ5 413 aaKnown RBP21.43■■□□□ 1.02
CLN3-230ENST00000568076 CPXM1Q96SM3 734 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 ABHD16BQ9H3Z7 469 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 FEZ2Q9UHY8 353 aaPredicted RBP21.43■■□□□ 1.02
CLN3-230ENST00000568076 STRIP2Q9ULQ0 834 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 GOLGA8SH3BPF8 625 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 ITGA8P53708 1063 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 GPR162Q16538 588 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 FAM110CQ1W6H9 321 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 CCDC25Q86WR0 208 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 ARFGAP2Q8N6H7 521 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 RAPGEF5Q92565 580 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 TMEM176AQ96HP8 235 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 HPDLQ96IR7 371 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 SETD4Q9NVD3 440 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 LCMT1Q9UIC8 334 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 AGAP1Q9UPQ3 857 aa21.43■■□□□ 1.02
CLN3-230ENST00000568076 SIGLEC16A6NMB1 481 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 PPP2R2AP63151 447 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 DGKDQ16760 1214 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 KYAT1Q16773 422 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 KIZQ2M2Z5 673 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 HOOK3Q86VS8 718 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 ARFGAP1Q8N6T3 406 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 ACAP3Q96P50 834 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 PARK7Q99497 189 aaKnown RBP21.42■■□□□ 1.02
CLN3-230ENST00000568076 CXCL16Q9H2A7 254 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 C2CD2Q9Y426 696 aa21.42■■□□□ 1.02
CLN3-230ENST00000568076 MICAL2O94851 1124 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ERBB2P04626 1255 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 VPS41P49754 854 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ODF2Q5BJF6 829 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ZFYVE27Q5T4F4 411 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 SPOCD1Q6ZMY3 1216 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 PRUNE1Q86TP1 453 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 PPP1R13LQ8WUF5 828 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 CYP3A43Q9HB55 503 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 KRT3P12035 628 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ATF2P15336 505 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ATF7P17544 494 aaPredicted RBP21.41■■□□□ 1.02
CLN3-230ENST00000568076 CCT5P48643 541 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 PSMC1P62191 440 aaKnown RBP21.41■■□□□ 1.02
CLN3-230ENST00000568076 FKBP1BP68106 108 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 PTGISQ16647 500 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 IQSEC1Q6DN90 963 aa21.41■■□□□ 1.02
CLN3-230ENST00000568076 ZNF410Q86VK4 478 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms