RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SDCBP2Q9H190 292 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 SMYD3Q9H7B4 428 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 CYP4F11Q9HBI6 524 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 APOBEC3GQ9HC16 384 aaKnown RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 TMEM8AQ9HCN3 771 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 HCFC1R1Q9NWW0 138 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 DDX43Q9NXZ2 648 aaKnown RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 YIPF1Q9Y548 306 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 BICDL2A1A5D9 508 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 GOLGA6L22H0YM25 854 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 DLL1O00548 723 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 PRRG1O14668 218 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 PHACTR2O75167 634 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 SP100P23497 879 aaPredicted RBP10.5□□□□□ -0.73
CLK3-220ENST00000567992 LMO2P25791 158 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 GTF2H1P32780 548 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 ASPAP45381 313 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 RAP1GAPP47736 663 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 LHX1P48742 406 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 MXI1P50539 228 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 CDR1P51861 262 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 MYL7Q01449 175 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 DUSP4Q13115 394 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 CBWD6Q4V339 395 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 CBWD3Q5JTY5 395 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 CBWD5Q5RIA9 395 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 KRT39Q6A163 491 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 SPOPLQ6IQ16 392 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 GRASPQ7Z6J2 395 aaPredicted RBP10.5□□□□□ -0.73
CLK3-220ENST00000567992 FRMD5Q7Z6J6 570 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 FILIP1Q7Z7B0 1213 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 THEM5Q8N1Q8 247 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 MLKLQ8NB16 471 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 SEMA4DQ92854 862 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 RPGRIP1Q96KN7 1286 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 DNAJC25Q9H1X3 360 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 MMRN2Q9H8L6 949 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 CRTAC1Q9NQ79 661 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 CEP72Q9P209 647 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 DNMT3BQ9UBC3 853 aaKnown RBP10.5□□□□□ -0.73
CLK3-220ENST00000567992 HSFX1Q9UBD0 423 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 NXF1Q9UBU9 619 aaKnown RBP10.5□□□□□ -0.73
CLK3-220ENST00000567992 RWDD2AQ9UIY3 292 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 USTQ9Y2C2 406 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 SLC27A5Q9Y2P5 690 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 R3HCC1Q9Y3T6 440 aaKnown RBP10.5□□□□□ -0.73
CLK3-220ENST00000567992 OBSL1O75147 1896 aa10.5□□□□□ -0.73
CLK3-220ENST00000567992 GREB1Q4ZG55 1949 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 MYBPHLA2RUH7 354 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 TNFRSF10AO00220 468 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 ATP2C2O75185 946 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 XYLBO75191 536 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 SOAT2O75908 522 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 MBD3O95983 291 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 FAM163BP0C2L3 166 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 ATF6P18850 670 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 ELF1P32519 619 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 SSTR3P32745 418 aaPredicted RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 PIK3CAP42336 1068 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 CDH8P55286 799 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 MARSP56192 900 aaKnown RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 NLRP12P59046 1061 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 PSMC1P62191 440 aaKnown RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 TNNC1P63316 161 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 NOP14P78316 857 aaKnown RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 TSPY1Q01534 308 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 TWF1Q12792 350 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 SLC5A9Q2M3M2 681 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 SGSM1Q2NKQ1 1148 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 DCAF17Q5H9S7 520 aaPredicted RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 ZNF667Q5HYK9 610 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 PRSS36Q5K4E3 855 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 FAM171BQ6P995 826 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 POTEHQ6S545 545 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 SCARA5Q6ZMJ2 495 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 DCP1BQ8IZD4 617 aaKnown RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 C2orf15Q8WU43 125 aaKnown RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 TAF4BQ92750 862 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 MYADMQ96S97 322 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 MMS19Q96T76 1030 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 SYT15Q9BQS2 421 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 PI4K2AQ9BTU6 479 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 LRRC3Q9BY71 257 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 BCO2Q9BYV7 579 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 DPEP3Q9H4B8 488 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 PIDD1Q9HB75 910 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 AVENQ9NQS1 362 aaPredicted RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 HMGXB4Q9UGU5 601 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 ARMCX3Q9UH62 379 aaPredicted RBP10.49□□□□□ -0.73
CLK3-220ENST00000567992 COQ4Q9Y3A0 265 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 PATJQ8NI35 1801 aa10.49□□□□□ -0.73
CLK3-220ENST00000567992 MOSPD3O75425 235 aa10.48□□□□□ -0.73
CLK3-220ENST00000567992 LRG1P02750 347 aa10.48□□□□□ -0.73
CLK3-220ENST00000567992 HAPLN1P10915 354 aaPredicted RBP10.48□□□□□ -0.73
CLK3-220ENST00000567992 PCSK1P29120 753 aa10.48□□□□□ -0.73
CLK3-220ENST00000567992 CCR2P41597 374 aa10.48□□□□□ -0.73
CLK3-220ENST00000567992 EPHA5P54756 1037 aa10.48□□□□□ -0.73
CLK3-220ENST00000567992 SMARCB1Q12824 385 aa10.48□□□□□ -0.73
CLK3-220ENST00000567992 NFE2Q16621 373 aaPredicted RBP10.48□□□□□ -0.73
CLK3-220ENST00000567992 PABPC1LQ4VXU2 614 aaKnown RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms