RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.99□□□□□ -0.17
VPS4A-204ENST00000566354 GABBR1Q9UBS5 961 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 MROH7Q68CQ1 1323 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ANP32DO95626 131 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 SNAI1O95863 264 aaPredicted RBP13.99□□□□□ -0.17
VPS4A-204ENST00000566354 CCND1P24385 295 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 SKIV2L2P42285 1042 aaKnown RBP13.99□□□□□ -0.17
VPS4A-204ENST00000566354 CD151P48509 253 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 PSMC5P62195 406 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 KLF1Q13351 362 aaPredicted RBP13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ACVR2BQ13705 512 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 MTFR1Q15390 333 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ACCSLQ4AC99 568 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 CCDC62Q6P9F0 684 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ASRGL1Q7L266 308 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ZNF467Q7Z7K2 595 aaPredicted RBP13.99□□□□□ -0.17
VPS4A-204ENST00000566354 RDM1Q8NG50 284 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 AGAP11Q8TF27 550 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 MIEF2Q96C03 454 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 FAM212AQ96EL1 285 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 STAMBPL1Q96FJ0 436 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 HERPUD2Q9BSE4 406 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 FOXP3Q9BZS1 431 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 TRIM7Q9C029 511 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ANKEF1Q9NU02 776 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 DNAJC17Q9NVM6 304 aaKnown RBP13.99□□□□□ -0.17
VPS4A-204ENST00000566354 PCDHB2Q9Y5E7 798 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ZNF236Q9UL36 1845 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 CEP350Q5VT06 3117 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ZNF862O60290 1169 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 RRM1P23921 792 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 NPTX2P47972 431 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 SLC8A3P57103 927 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 BPIFB4P59827 614 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 CYP24A1Q07973 514 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 CCDC15Q0P6D6 951 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 MAP2K5Q13163 448 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 DMP1Q13316 513 aaPredicted RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 XKR9Q5GH70 373 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 GJC2Q5T442 439 aaPredicted RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 TAPT1Q6NXT6 567 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 MAMDC4Q6UXC1 1216 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 SRRM1Q8IYB3 904 aaKnown RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 RIBC1Q8N443 379 aaPredicted RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 KATNBL1Q9H079 304 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 TOPORSQ9NS56 1045 aaPredicted RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 NOP53Q9NZM5 478 aaKnown RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 TBK1Q9UHD2 729 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 R3HDM2Q9Y2K5 976 aaKnown RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 C15orf41Q9Y2V0 281 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 DENND3A2RUS2 1198 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 FOXO6A8MYZ6 492 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 PSTPIP1O43586 416 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 PROSCO94903 275 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 PSAPP07602 524 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 TXNP10599 105 aaKnown RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 RALAP11233 206 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 NSFP46459 744 aaKnown RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 CLNS1AP54105 237 aaKnown RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 IL9RQ01113 521 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 MYO1EQ12965 1108 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 NR1H3Q13133 447 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 HSDL1Q3SXM5 330 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 PLA2G4FQ68DD2 849 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 METTL7BQ6UX53 244 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 NSMCE1Q8WV22 266 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 CPA5Q8WXQ8 436 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 NTPCRQ9BSD7 190 aaKnown RBP13.98□□□□□ -0.17
VPS4A-204ENST00000566354 TINF2Q9BSI4 451 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 ARHGAP39Q9C0H5 1083 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 FLRT1Q9NZU1 646 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 L3MBTL1Q9Y468 752 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 HTTP42858 3142 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 MGAMO43451 1857 aa13.98□□□□□ -0.17
VPS4A-204ENST00000566354 GSTTP1A0A1W2PQM5 241 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 TNPO2O14787 897 aaKnown RBP13.97□□□□□ -0.17
VPS4A-204ENST00000566354 KRT16P08779 473 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 RPSAP08865 295 aaKnown RBP13.97□□□□□ -0.17
VPS4A-204ENST00000566354 ABHD2P08910 425 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 SUPT20HL2P0C7V6 817 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 CCNB1P14635 433 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 MSH2P43246 934 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 MAGEA8P43361 318 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 VPS41P49754 854 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 C1QTNF12Q5T7M4 302 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 IZUMO3Q5VZ72 239 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 AP1ARQ63HQ0 302 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 RHOT1Q8IXI2 618 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 POMGNT1Q8WZA1 660 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 PWWP2AQ96N64 755 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 SH3GL3Q99963 347 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 HEMGNQ9BXL5 484 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 PITPNM3Q9BZ71 974 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 KMT5AQ9NQR1 393 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 C1orf112Q9NSG2 853 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 EURLQ9NYK6 297 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 FAM47DPA6NHR8 397 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 RASA4BC9J798 803 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 RASA4O43374 803 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 ATG7O95352 703 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms