RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 MYOFQ9NZM1 2061 aa7.96□□□□□ -1.13
VPS4A-203ENST00000564399 KNL1Q8NG31 2342 aa7.96□□□□□ -1.13
VPS4A-203ENST00000564399 SPEGQ15772 3267 aa7.96□□□□□ -1.13
VPS4A-203ENST00000564399 PTPRDP23468 1912 aa7.96□□□□□ -1.13
VPS4A-203ENST00000564399 SPAARA0A1B0GVQ0 90 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 OTOL1A6NHN0 477 aaPredicted RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 BTBD18B2RXH4 712 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 WNT7AO00755 349 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 MEFVO15553 781 aaPredicted RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 LARGE1O95461 756 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 ARSAP15289 507 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 CCT6AP40227 531 aaKnown RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 MATR3P43243 847 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 MAPK8P45983 427 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 NPTX2P47972 431 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 TUFMP49411 452 aaKnown RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 FOSBP53539 338 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 SIM1P81133 766 aaPredicted RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 SPAG1Q07617 926 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 LMAN2Q12907 356 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 DMP1Q13316 513 aaPredicted RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 MYBPC2Q14324 1141 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 SLC10A6Q3KNW5 377 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 MGAT5BQ3V5L5 792 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 TRIM61Q5EBN2 209 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 C19orf48Q6RUI8 117 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 TTC30AQ86WT1 665 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 TMEM130Q8N3G9 435 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 MAB21L3Q8N8X9 362 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 GIPC2Q8TF65 315 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 ZBTB45Q96K62 511 aaPredicted RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 NUSAP1Q9BXS6 441 aaKnown RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 TMEM134Q9H6X4 195 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 IL21Q9HBE4 155 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 KMT5AQ9NQR1 393 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 TDP1Q9NUW8 608 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 ANKFY1Q9P2R3 1169 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 ZMYM5Q9UJ78 669 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 CIZ1Q9ULV3 898 aaPredicted RBP7.96□□□□□ -1.14
VPS4A-203ENST00000564399 CCL26Q9Y258 94 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 SCN1AP35498 2009 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 IGSF10Q6WRI0 2623 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 NBEAQ8NFP9 2946 aa7.96□□□□□ -1.14
VPS4A-203ENST00000564399 ASPMQ8IZT6 3477 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 KIAA1549LQ6ZVL6 1849 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 MAP3K13O43283 966 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 CXCL8P10145 99 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 TYMPP19971 482 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 BCKDHBP21953 392 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 PROZP22891 400 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 LRPAP1P30533 357 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 GJA4P35212 333 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 STRN3Q13033 797 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 TRIM29Q14134 588 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 NOLC1Q14978 699 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS4A-203ENST00000564399 PDGFRLQ15198 375 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 SLC39A12Q504Y0 691 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 HAUS3Q68CZ6 603 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 NAIF1Q69YI7 327 aaPredicted RBP7.95□□□□□ -1.14
VPS4A-203ENST00000564399 ANO7Q6IWH7 933 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 TAS1R3Q7RTX0 852 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 DIS3L2Q8IYB7 885 aaKnown RBP7.95□□□□□ -1.14
VPS4A-203ENST00000564399 CPA6Q8N4T0 437 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 CCDC26Q8TAB7 109 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 USP13Q92995 863 aaPredicted RBP7.95□□□□□ -1.14
VPS4A-203ENST00000564399 CD101Q93033 1021 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 KIF9Q9HAQ2 790 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 UBQLN1Q9UMX0 589 aaKnown RBP7.95□□□□□ -1.14
VPS4A-203ENST00000564399 KIAA1024Q9UPX6 916 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 RBM19Q9Y4C8 960 aaKnown RBP7.95□□□□□ -1.14
VPS4A-203ENST00000564399 OBSL1O75147 1896 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 SHROOM3Q8TF72 1996 aa7.95□□□□□ -1.14
VPS4A-203ENST00000564399 EIF4E1BA6NMX2 242 aaKnown RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 H0Y626 953 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ABLIM1O14639 778 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 SLC16A4O15374 487 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 CLDN3O15551 220 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 XPOTO43592 962 aaKnown RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 PFKFB2O60825 505 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 HIP1RO75146 1068 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 TOM1L1O75674 476 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 TRIM16O95361 564 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ZIC2O95409 532 aaPredicted RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 OR52Z1P0C646 297 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ODC1P11926 461 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ATF6P18850 670 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 MUTP22033 750 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 NMT1P30419 496 aaKnown RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 IFNAR2P48551 515 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 GUCY2FP51841 1108 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ATXN3P54252 364 aaPredicted RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 SEC13P55735 322 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 NR1H3Q13133 447 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ZNF174Q15697 407 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 SOWAHCQ53LP3 525 aaPredicted RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 C2orf27AQ580R0 203 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 TXNDC8Q6A555 127 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ARMCX6Q7L4S7 300 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 LPCAT2Q7L5N7 544 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 PDZD3Q86UT5 571 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms