RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 MMP8P22894 467 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 STAT5BP51692 787 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 GSCP56915 257 aaPredicted RBP14.23□□□□□ -0.13
CLK3-215ENST00000564353 TRPC3Q13507 836 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 HSDL1Q3SXM5 330 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 LACTB2Q53H82 288 aaPredicted RBP14.23□□□□□ -0.13
CLK3-215ENST00000564353 SPATA21Q7Z572 469 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 KATNAL2Q8IYT4 538 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 HSPH1Q92598 858 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 TMEM109Q9BVC6 243 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 INO80BQ9C086 356 aaPredicted RBP14.23□□□□□ -0.13
CLK3-215ENST00000564353 HMGXB4Q9UGU5 601 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 GRID1Q9ULK0 1009 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 EIF4E1BA6NMX2 242 aaKnown RBP14.23□□□□□ -0.13
CLK3-215ENST00000564353 PSTPIP1O43586 416 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 GRAP2O75791 330 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 IL1R2P27930 398 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 GCAP28676 217 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 ARL2P36404 184 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 NAMPTP43490 491 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 SPOCD1Q6ZMY3 1216 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 CATSPERGQ6ZRH7 1159 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 KIAA0319LQ8IZA0 1049 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 RDM1Q8NG50 284 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 SLCO2A1Q92959 643 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 TRIM11Q96F44 468 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 FAM81BQ96LP2 452 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 BTBD7Q9P203 1132 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 CYTH4Q9UIA0 394 aa14.23□□□□□ -0.13
CLK3-215ENST00000564353 MAFBQ9Y5Q3 323 aaPredicted RBP14.23□□□□□ -0.13
CLK3-215ENST00000564353 TCRBV7S3A2A0A539 114 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 TMEM191CA6NGB0 347 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 CHUKO15111 745 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 ARIH2O95376 493 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 TMEM191BP0C7N4 346 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 CDC25CP30307 473 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 RPA3P35244 121 aaPredicted RBP14.22□□□□□ -0.13
CLK3-215ENST00000564353 RNASELQ05823 741 aaKnown RBP14.22□□□□□ -0.13
CLK3-215ENST00000564353 SH3PXD2AQ5TCZ1 1133 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 ERICH1Q86X53 443 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 ZNF677Q86XU0 584 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 EXD1Q8NHP7 514 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 CKAP2Q8WWK9 683 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 TMEM237Q96Q45 408 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 AS3MTQ9HBK9 375 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 SLC12A4Q9UP95 1085 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 KIAA1217Q5T5P2 1943 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 BRCA2P51587 3418 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 MAFGO15525 162 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 DKC1O60832 514 aaKnown RBP eCLIP14.22□□□□□ -0.13
CLK3-215ENST00000564353 CDH16O75309 829 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 ATP6V1G2O95670 118 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 PSMA2P25787 234 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 GCLCP48506 637 aaPredicted RBP14.22□□□□□ -0.13
CLK3-215ENST00000564353 NCALDP61601 193 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 CLDN10P78369 228 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 XRCC4Q13426 336 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 PLCB4Q15147 1175 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 MSS51Q4VC12 460 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 GJC2Q5T442 439 aaPredicted RBP14.22□□□□□ -0.13
CLK3-215ENST00000564353 PHF13Q86YI8 300 aaPredicted RBP14.22□□□□□ -0.13
CLK3-215ENST00000564353 TACO1Q9BSH4 297 aaKnown RBP14.22□□□□□ -0.13
CLK3-215ENST00000564353 PITPNM3Q9BZ71 974 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 SYNCQ9H7C4 482 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 NOD2Q9HC29 1040 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 KIAA1586Q9HCI6 787 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 IP6K2Q9UHH9 426 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 SCINQ9Y6U3 715 aa14.22□□□□□ -0.13
CLK3-215ENST00000564353 SUN1O94901 812 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 ALDH5A1P51649 535 aaPredicted RBP14.21□□□□□ -0.13
CLK3-215ENST00000564353 CLCN3P51790 818 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 ITIH4Q14624 930 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 CDO1Q16878 200 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 ZNF699Q32M78 642 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 EEF1DP3Q658K8 133 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 SLC16A10Q8TF71 515 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 MAIP1Q8WWC4 291 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 FER1L6Q2WGJ9 1857 aa14.21□□□□□ -0.13
CLK3-215ENST00000564353 ADCY3O60266 1144 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 CST8O60676 142 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 FARP2O94887 1054 aaPredicted RBP14.21□□□□□ -0.14
CLK3-215ENST00000564353 KRT16P08779 473 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 CXCL8P10145 99 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 CA4P22748 312 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 ZNF280AP59817 542 aaPredicted RBP14.21□□□□□ -0.14
CLK3-215ENST00000564353 LACTBP83111 547 aaPredicted RBP14.21□□□□□ -0.14
CLK3-215ENST00000564353 TFDP1Q14186 410 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 SMAD1Q15797 465 aaKnown RBP14.21□□□□□ -0.14
CLK3-215ENST00000564353 PTPN20Q4JDL3 420 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 DCAF15Q66K64 600 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 NPNTQ6UXI9 565 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 ZC3H18Q86VM9 953 aaKnown RBP14.21□□□□□ -0.14
CLK3-215ENST00000564353 ACTL9Q8TC94 416 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 KLHL29Q96CT2 875 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 STAMBPL1Q96FJ0 436 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 CDHR1Q96JP9 859 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 CALN1Q9BXU9 219 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 ADGRA2Q96PE1 1338 aa14.21□□□□□ -0.14
CLK3-215ENST00000564353 PPP1R12AO14974 1030 aaPredicted RBP14.2□□□□□ -0.14
CLK3-215ENST00000564353 TJP3O95049 919 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms