RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CDC25CP30307 473 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 ABCD1P33897 745 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 SIM2Q14190 667 aaPredicted RBP18.21■□□□□ 0.51
CLN3-211ENST00000564091 DGKKQ5KSL6 1271 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 BRAPQ7Z569 592 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 POMGNT1Q8WZA1 660 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 GCNAQ96QF7 691 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 CCSER1Q9C0I3 900 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 ST6GALNAC4Q9H4F1 302 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 ABI2Q9NYB9 513 aaPredicted RBP18.21■□□□□ 0.51
CLN3-211ENST00000564091 CDV3Q9UKY7 258 aaKnown RBP18.21■□□□□ 0.51
CLN3-211ENST00000564091 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.21■□□□□ 0.51
CLN3-211ENST00000564091 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.21■□□□□ 0.51
CLN3-211ENST00000564091 FANCMQ8IYD8 2048 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 RETP07949 1114 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 SDHBP21912 280 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 GPR15P49685 360 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 MCM2P49736 904 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 WNT7BP56706 349 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 KCNA1Q09470 495 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 LAIR1Q6GTX8 287 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 STKLD1Q8NE28 680 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 ZSWIM2Q8NEG5 633 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 TMLHEQ9NVH6 421 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 TBC1D7Q9P0N9 293 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 CLIC4Q9Y696 253 aa18.2■□□□□ 0.5
CLN3-211ENST00000564091 TPRP12270 2363 aaKnown RBP18.19■□□□□ 0.5
CLN3-211ENST00000564091 KPNA7A9QM74 516 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 CITO14578 2027 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 WEE1P30291 646 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 PLCB2Q00722 1185 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 CCINQ13939 588 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 SCARA3Q6AZY7 606 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 TMEM150AQ86TG1 271 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 LONP2Q86WA8 852 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 SPPL2BQ8TCT7 592 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 C2orf15Q8WU43 125 aaKnown RBP18.19■□□□□ 0.5
CLN3-211ENST00000564091 FAM84AQ96KN4 292 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 FAM213AQ9BRX8 229 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 GKN1Q9NS71 199 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 CCL26Q9Y258 94 aa18.19■□□□□ 0.5
CLN3-211ENST00000564091 VPS37CA5D8V6 355 aaPredicted RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 PPP1R37O75864 691 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 PAPSS2O95340 614 aaPredicted RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 HMGA1P17096 107 aaKnown RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 TFAMQ00059 246 aaKnown RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 POU5F1Q01860 360 aaKnown RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 SMARCB1Q12824 385 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 POSTNQ15063 836 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 PTPAQ15257 358 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 ITPRIPL2Q3MIP1 535 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 SV2CQ496J9 727 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 SDHAF4Q5VUM1 108 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 DCP1BQ8IZD4 617 aaKnown RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 CMTM8Q8IZV2 173 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 MAB21L3Q8N8X9 362 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 SAAL1Q96ER3 474 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 CLIC6Q96NY7 704 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 PI4K2AQ9BTU6 479 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 STRA6Q9BX79 667 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 MRPL44Q9H9J2 332 aaKnown RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 THG1LQ9NWX6 298 aaKnown RBP18.18■□□□□ 0.5
CLN3-211ENST00000564091 PCDHB5Q9Y5E4 795 aa18.18■□□□□ 0.5
CLN3-211ENST00000564091 PATJQ8NI35 1801 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 MYMKA6NI61 221 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 EXTL3O43909 919 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 PRPF40AO75400 957 aaKnown RBP18.17■□□□□ 0.5
CLN3-211ENST00000564091 IL18RAPO95256 599 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 F11P03951 625 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 POLR2BP30876 1174 aaKnown RBP18.17■□□□□ 0.5
CLN3-211ENST00000564091 NLRP12P59046 1061 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 TXNDC8Q6A555 127 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 TRIM68Q6AZZ1 485 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 PKN3Q6P5Z2 889 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 PDCL2Q8N4E4 241 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 USP13Q92995 863 aaPredicted RBP18.17■□□□□ 0.5
CLN3-211ENST00000564091 FAM83CQ9BQN1 747 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 RTKNQ9BST9 563 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 UPF2Q9HAU5 1272 aaKnown RBP18.17■□□□□ 0.5
CLN3-211ENST00000564091 HPS4Q9NQG7 708 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 SEMA4GQ9NTN9 838 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 CCDC39Q9UFE4 941 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 FBXO2Q9UK22 296 aaPredicted RBP18.17■□□□□ 0.5
CLN3-211ENST00000564091 MAGED2Q9UNF1 606 aaPredicted RBP18.17■□□□□ 0.5
CLN3-211ENST00000564091 AGAP1Q9UPQ3 857 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 EPG5Q9HCE0 2579 aa18.17■□□□□ 0.5
CLN3-211ENST00000564091 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.16■□□□□ 0.5
CLN3-211ENST00000564091 OTOL1A6NHN0 477 aaPredicted RBP18.16■□□□□ 0.5
CLN3-211ENST00000564091 ITGB3P05106 788 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 CNR2P34972 360 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 AVPR1AP37288 418 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 PXNP49023 591 aaPredicted RBP18.16■□□□□ 0.5
CLN3-211ENST00000564091 CASP5P51878 434 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 TSPY1Q01534 308 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 DDR2Q16832 855 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 RRAGBQ5VZM2 374 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 FAM173BQ6P4H8 233 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 CEP68Q76N32 757 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.16■□□□□ 0.5
CLN3-211ENST00000564091 SYNPOQ8N3V7 929 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms