RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 RDH13Q8NBN7 331 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 TTC8Q8TAM2 541 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 DEPDC1BQ8WUY9 529 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 DNASE1L2Q92874 299 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 CLDN23Q96B33 292 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 ZNF560Q96MR9 790 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 LRRC3BQ96PB8 259 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 PI4K2AQ9BTU6 479 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 TRIM9Q9C026 710 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 MTMR12Q9C0I1 747 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 LRRC27Q9C0I9 530 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 L1RE1Q9UN81 338 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 MRPS17Q9Y2R5 130 aaKnown RBP11.01□□□□□ -0.65
LDLR-214ENST00000560628 CACNA1IQ9P0X4 2223 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 ZNF233A6NK53 670 aa11□□□□□ -0.65
LDLR-214ENST00000560628 MAN2B1O00754 1011 aa11□□□□□ -0.65
LDLR-214ENST00000560628 DPYSL4O14531 572 aa11□□□□□ -0.65
LDLR-214ENST00000560628 HCRTO43612 131 aa11□□□□□ -0.65
LDLR-214ENST00000560628 PRPF40AO75400 957 aaKnown RBP11□□□□□ -0.65
LDLR-214ENST00000560628 F13A1P00488 732 aa11□□□□□ -0.65
LDLR-214ENST00000560628 LMNAP02545 664 aaKnown RBP11□□□□□ -0.65
LDLR-214ENST00000560628 TMEM191BP0C7N4 346 aa11□□□□□ -0.65
LDLR-214ENST00000560628 ME1P48163 572 aa11□□□□□ -0.65
LDLR-214ENST00000560628 TSPY1Q01534 308 aa11□□□□□ -0.65
LDLR-214ENST00000560628 PKP1Q13835 747 aa11□□□□□ -0.65
LDLR-214ENST00000560628 ARHGAP15Q53QZ3 475 aa11□□□□□ -0.65
LDLR-214ENST00000560628 SDHAF4Q5VUM1 108 aa11□□□□□ -0.65
LDLR-214ENST00000560628 TSSK4Q6SA08 328 aa11□□□□□ -0.65
LDLR-214ENST00000560628 OSTM1Q86WC4 334 aa11□□□□□ -0.65
LDLR-214ENST00000560628 NELFCDQ8IXH7 590 aa11□□□□□ -0.65
LDLR-214ENST00000560628 STKLD1Q8NE28 680 aa11□□□□□ -0.65
LDLR-214ENST00000560628 OR5B17Q8NGF7 314 aa11□□□□□ -0.65
LDLR-214ENST00000560628 CXorf38Q8TB03 319 aa11□□□□□ -0.65
LDLR-214ENST00000560628 SPPL2BQ8TCT7 592 aa11□□□□□ -0.65
LDLR-214ENST00000560628 FAM3CQ92520 227 aa11□□□□□ -0.65
LDLR-214ENST00000560628 E2F7Q96AV8 911 aa11□□□□□ -0.65
LDLR-214ENST00000560628 ZFYVE19Q96K21 471 aa11□□□□□ -0.65
LDLR-214ENST00000560628 C7orf25Q9BPX7 421 aa11□□□□□ -0.65
LDLR-214ENST00000560628 MKNK1Q9BUB5 465 aa11□□□□□ -0.65
LDLR-214ENST00000560628 SMG9Q9H0W8 520 aaKnown RBP11□□□□□ -0.65
LDLR-214ENST00000560628 BLZF1Q9H2G9 400 aa11□□□□□ -0.65
LDLR-214ENST00000560628 CUEDC2Q9H467 287 aa11□□□□□ -0.65
LDLR-214ENST00000560628 LMAN1LQ9HAT1 526 aa11□□□□□ -0.65
LDLR-214ENST00000560628 IL21Q9HBE4 155 aa11□□□□□ -0.65
LDLR-214ENST00000560628 DDX43Q9NXZ2 648 aaKnown RBP11□□□□□ -0.65
LDLR-214ENST00000560628 HSPBP1Q9NZL4 362 aa11□□□□□ -0.65
LDLR-214ENST00000560628 HSFX1Q9UBD0 423 aa11□□□□□ -0.65
LDLR-214ENST00000560628 SIX4Q9UIU6 781 aa11□□□□□ -0.65
LDLR-214ENST00000560628 ITGA11Q9UKX5 1188 aa11□□□□□ -0.65
LDLR-214ENST00000560628 PCDHA7Q9UN72 937 aa11□□□□□ -0.65
LDLR-214ENST00000560628 PCDHB5Q9Y5E4 795 aa11□□□□□ -0.65
LDLR-214ENST00000560628 SNX9Q9Y5X1 595 aa11□□□□□ -0.65
LDLR-214ENST00000560628 PIAS3Q9Y6X2 628 aa11□□□□□ -0.65
LDLR-214ENST00000560628 CLIC2O15247 247 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 FGF19O95750 216 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 CCNE1P24864 410 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 CYP2F1P24903 491 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 AFMP43652 599 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 SOX9P48436 509 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 KPNA1P52294 538 aaPredicted RBP10.99□□□□□ -0.65
LDLR-214ENST00000560628 DNM1Q05193 864 aaKnown RBP10.99□□□□□ -0.65
LDLR-214ENST00000560628 SMARCB1Q12824 385 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 MTAPQ13126 283 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 DDR2Q16832 855 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 CCDC142Q17RM4 750 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 DUOXA2Q1HG44 320 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 FAM26FQ5R3K3 315 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 ZNF687Q8N1G0 1237 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 LRRC52Q8N7C0 313 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 ZNF507Q8TCN5 953 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 CSGALNACT1Q8TDX6 532 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 C2orf15Q8WU43 125 aaKnown RBP10.99□□□□□ -0.65
LDLR-214ENST00000560628 ANKRD36BP1Q96IX9 119 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 SLC46A2Q9BY10 475 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 SEMA4AQ9H3S1 761 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 TASP1Q9H6P5 420 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 TRPV5Q9NQA5 729 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 INTS13Q9NVM9 706 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 FAM13BQ9NYF5 915 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 GTF3C4Q9UKN8 822 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 MAGED2Q9UNF1 606 aaPredicted RBP10.99□□□□□ -0.65
LDLR-214ENST00000560628 R3HCC1Q9Y3T6 440 aaKnown RBP10.99□□□□□ -0.65
LDLR-214ENST00000560628 PTPRJQ12913 1337 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 ANK1P16157 1881 aa10.99□□□□□ -0.65
LDLR-214ENST00000560628 RIF1Q5UIP0 2472 aaKnown RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 MYBPHLA2RUH7 354 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 SLC38A8A6NNN8 435 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 ARNTLO00327 626 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 KIAA0391O15091 583 aaKnown RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 CHADO15335 359 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 TGFB1I1O43294 461 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 ATP2C2O75185 946 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 PRAMEF12O95522 483 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 TNNC2P02585 160 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 F11P03951 625 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 HMGA1P17096 107 aaKnown RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 CDC25CP30307 473 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 MAGEA9P43362 315 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 RPS9P46781 194 aaKnown RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 CYP2J2P51589 502 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms