RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TWNKQ96RR1 684 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 TMLHEQ9NVH6 421 aa23.29■■□□□ 1.32
SNX1-210ENST00000560260 AJAP1Q9UKB5 411 aaPredicted RBP23.29■■□□□ 1.32
SNX1-210ENST00000560260 ATP2C2O75185 946 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 GLUD1P00367 558 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 FAM163BP0C2L3 166 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 SPATA31D3P0C874 917 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 CPB1P15086 417 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 PSMC1P62191 440 aaKnown RBP23.28■■□□□ 1.32
SNX1-210ENST00000560260 INCA1Q0VD86 236 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 ORC1Q13415 861 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 CUL2Q13617 745 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 INTS6LQ5JSJ4 861 aaKnown RBP23.28■■□□□ 1.32
SNX1-210ENST00000560260 PHLDB3Q6NSJ2 640 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 SPATA31D4Q6ZUB0 917 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 THEM5Q8N1Q8 247 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 ANKRD20A12PQ8NF67 263 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 OR6B3Q8NGW1 331 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 LPIN3Q9BQK8 851 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 CYP3A43Q9HB55 503 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 FBXW11Q9UKB1 542 aa23.28■■□□□ 1.32
SNX1-210ENST00000560260 SPTBN5Q9NRC6 3674 aaKnown RBP23.27■■□□□ 1.32
SNX1-210ENST00000560260 XIRP2A4UGR9 3374 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 TBX10O75333 385 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 PDGFRBP09619 1106 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 CD58P19256 250 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 KLK7P49862 253 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 DLX2Q07687 328 aaPredicted RBP23.27■■□□□ 1.32
SNX1-210ENST00000560260 ADAM15Q13444 863 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 RNF19BQ6ZMZ0 732 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 FEZF2Q8TBJ5 459 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 WHAMMQ8TF30 809 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 FAXDC2Q96IV6 333 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 KREMEN1Q96MU8 473 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 PGLYRP2Q96PD5 576 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 SYT15Q9BQS2 421 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 ACBD6Q9BR61 282 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 OXCT2Q9BYC2 517 aaPredicted RBP23.27■■□□□ 1.32
SNX1-210ENST00000560260 CRISPLD1Q9H336 500 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 SNX25Q9H3E2 840 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 CRTAC1Q9NQ79 661 aa23.27■■□□□ 1.32
SNX1-210ENST00000560260 GOLGA6L19H0YKK7 550 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 TEX33O43247 280 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 ABLIM3O94929 683 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 GNL1P36915 607 aaPredicted RBP23.26■■□□□ 1.31
SNX1-210ENST00000560260 LTBRP36941 435 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 NDST1P52848 882 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 GPR17Q13304 367 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 PTPN21Q16825 1174 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 SLC39A12Q504Y0 691 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 RRAGAQ7L523 313 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 PPFIBP1Q86W92 1011 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 PPM1KQ8N3J5 372 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 PABPC5Q96DU9 382 aaKnown RBP23.26■■□□□ 1.31
SNX1-210ENST00000560260 NAP1L5Q96NT1 182 aaPredicted RBP23.26■■□□□ 1.31
SNX1-210ENST00000560260 MAN1C1Q9NR34 630 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 CLDND1Q9NY35 253 aa23.26■■□□□ 1.31
SNX1-210ENST00000560260 BARX2Q9UMQ3 279 aaPredicted RBP23.26■■□□□ 1.31
SNX1-210ENST00000560260 MYBPHLA2RUH7 354 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 MTMR11A4FU01 709 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 A8MXQ7 604 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 CILPO75339 1184 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 SEC24AO95486 1093 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 ACO1P21399 889 aaKnown RBP23.25■■□□□ 1.31
SNX1-210ENST00000560260 PCSK1P29120 753 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 LSM14BQ9BX40 385 aaKnown RBP23.25■■□□□ 1.31
SNX1-210ENST00000560260 ELOVL4Q9GZR5 314 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 RBSNQ9H1K0 784 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 RTN4Q9NQC3 1192 aaKnown RBP23.25■■□□□ 1.31
SNX1-210ENST00000560260 CISHQ9NSE2 258 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 CLEC1BQ9P126 229 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 CDH9Q9ULB4 789 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 SIK3Q9Y2K2 1263 aa23.25■■□□□ 1.31
SNX1-210ENST00000560260 MTCL1Q9Y4B5 1905 aaKnown RBP23.24■■□□□ 1.31
SNX1-210ENST00000560260 BRWD1Q9NSI6 2320 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 A0A1B0GTH6 734 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 TPM2P07951 284 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 TPM4P67936 248 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 FANCCQ00597 558 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 TSPY1Q01534 308 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 GCNT1Q02742 428 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 FAM171BQ6P995 826 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 TMEM184AQ6ZMB5 413 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 TTC9BQ8N6N2 239 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 ATAD1Q8NBU5 361 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 KREMEN2Q8NCW0 462 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 ZNF461Q8TAF7 563 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 PRDM6Q9NQX0 595 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 APEX2Q9UBZ4 518 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 AFF4Q9UHB7 1163 aaKnown RBP23.24■■□□□ 1.31
SNX1-210ENST00000560260 GTF3C4Q9UKN8 822 aa23.24■■□□□ 1.31
SNX1-210ENST00000560260 C1RP00736 705 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 ATF2P15336 505 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 TBXAS1P24557 533 aaPredicted RBP23.23■■□□□ 1.31
SNX1-210ENST00000560260 UBXN1Q04323 297 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 ADCY1Q08828 1119 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 SYCP1Q15431 976 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 SKIV2LQ15477 1246 aaKnown RBP23.23■■□□□ 1.31
SNX1-210ENST00000560260 FKBP15Q5T1M5 1219 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 TPGS2Q68CL5 300 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms