RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 ITGB3P05106 788 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 CSH1P0DML2 217 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 CSH2P0DML3 217 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 DDX6P26196 483 aaKnown RBP eCLIP13.53□□□□□ -0.24
SNX1-209ENST00000559961 ADSSP30520 456 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 ID4P47928 161 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 CCR3P51677 355 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 CRELD2Q6UXH1 353 aaPredicted RBP13.53□□□□□ -0.24
SNX1-209ENST00000559961 HS2ST1Q7LGA3 356 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 TMEM130Q8N3G9 435 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 GPR161Q8N6U8 529 aaKnown RBP13.53□□□□□ -0.24
SNX1-209ENST00000559961 LRRC52Q8N7C0 313 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 OR10T2Q8NGX3 314 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 SPATA18Q8TC71 538 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 GIPC2Q8TF65 315 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 MRPS31Q92665 395 aaKnown RBP13.53□□□□□ -0.24
SNX1-209ENST00000559961 FNBP1Q96RU3 617 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 TMEM209Q96SK2 561 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 ACBD6Q9BR61 282 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 MAGEF1Q9HAY2 307 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 TFIP11Q9UBB9 837 aaKnown RBP13.53□□□□□ -0.24
SNX1-209ENST00000559961 MOSPD3O75425 235 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 SOAT2O75908 522 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 YEATS4O95619 227 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 HAPLN1P10915 354 aaPredicted RBP13.52□□□□□ -0.25
SNX1-209ENST00000559961 CCNE1P24864 410 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 ME1P48163 572 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 KCNA1Q09470 495 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 DUOXA2Q1HG44 320 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 DGKKQ5KSL6 1271 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 TMC8Q8IU68 726 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 SPATA2LQ8IUW3 424 aaPredicted RBP13.52□□□□□ -0.25
SNX1-209ENST00000559961 CELF5Q8N6W0 485 aaKnown RBP13.52□□□□□ -0.25
SNX1-209ENST00000559961 FSIP1Q8NA03 581 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 LINC00301Q8NCQ3 95 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 BPIFB1Q8TDL5 484 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 DHX58Q96C10 678 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 LPIN3Q9BQK8 851 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 STRA6Q9BX79 667 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 DNAJC25Q9H1X3 360 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 CRISPLD1Q9H336 500 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 DDX43Q9NXZ2 648 aaKnown RBP13.52□□□□□ -0.25
SNX1-209ENST00000559961 CFAP45Q9UL16 551 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 MAGED2Q9UNF1 606 aaPredicted RBP13.52□□□□□ -0.25
SNX1-209ENST00000559961 SNX9Q9Y5X1 595 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 VWA8A3KMH1 1905 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 CITO14578 2027 aa13.52□□□□□ -0.25
SNX1-209ENST00000559961 FRMD3A2A2Y4 597 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 SDHBP21912 280 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 WEE1P30291 646 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 CXCL12P48061 93 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 SNRPFP62306 86 aaKnown RBP13.51□□□□□ -0.25
SNX1-209ENST00000559961 FCHO2Q0JRZ9 810 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 MTAPQ13126 283 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 MAPRE1Q15691 268 aaKnown RBP13.51□□□□□ -0.25
SNX1-209ENST00000559961 FOXD4L5Q5VV16 416 aaPredicted RBP13.51□□□□□ -0.25
SNX1-209ENST00000559961 ATL3Q6DD88 541 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 C4orf50Q6ZRC1 276 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 GAREM2Q75VX8 874 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 RALGPS2Q86X27 583 aaPredicted RBP13.51□□□□□ -0.25
SNX1-209ENST00000559961 GPIHBP1Q8IV16 184 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 EFCAB13Q8IY85 973 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 KIAA2013Q8IYS2 634 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 CEP57L1Q8IYX8 460 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 PDCL2Q8N4E4 241 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 TOP6BLQ8N6T0 577 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 FOXD4L4Q8WXT5 416 aaPredicted RBP13.51□□□□□ -0.25
SNX1-209ENST00000559961 CBWD1Q9BRT8 395 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 PI4K2AQ9BTU6 479 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 LRRC3Q9BY71 257 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 CHRDQ9H2X0 955 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 PDE11AQ9HCR9 933 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 ABCB6Q9NP58 842 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 EHD2Q9NZN4 543 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 GMEB2Q9UKD1 530 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 CACNA1HO95180 2353 aa13.51□□□□□ -0.25
SNX1-209ENST00000559961 ZFHX2Q9C0A1 2572 aaPredicted RBP13.5□□□□□ -0.25
SNX1-209ENST00000559961 SLC38A8A6NNN8 435 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 SOBPA7XYQ1 873 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 EIF3DO15371 548 aaKnown RBP eCLIP13.5□□□□□ -0.25
SNX1-209ENST00000559961 VNN2O95498 520 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 TNNI1P19237 187 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 ANXA13P27216 316 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 PDE6CP51160 858 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 CYP4F8P98187 520 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 ITPRIPL2Q3MIP1 535 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 MAMSTRQ6ZN01 415 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 DPH6Q7L8W6 267 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 ADGRF2Q8IZF7 708 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 CMTM8Q8IZV2 173 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 C1orf127Q8N9H9 656 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 SNX21Q969T3 373 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 HPDLQ96IR7 371 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 MMS19Q96T76 1030 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 KIF9Q9HAQ2 790 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 GDAP2Q9NXN4 497 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 DOCK8Q8NF50 2099 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 MYH11P35749 1972 aa13.5□□□□□ -0.25
SNX1-209ENST00000559961 SPECC1L-ADORA2AF8WAN1 911 aa13.49□□□□□ -0.25
SNX1-209ENST00000559961 CDR1P51861 262 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms