RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 LDHAP00338 332 aaKnown RBP19.1■□□□□ 0.65
HDDC3-205ENST00000559898 KRT19P08727 400 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 GABRR2P28476 465 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 GDI1P31150 447 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 ALCAMQ13740 583 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 CNNM4Q6P4Q7 775 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 METTL23Q86XA0 190 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 ELMO3Q96BJ8 720 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 PKMYT1Q99640 499 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 PI4K2AQ9BTU6 479 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 SMG9Q9H0W8 520 aaKnown RBP19.1■□□□□ 0.65
HDDC3-205ENST00000559898 CUEDC2Q9H467 287 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 AGPAT3Q9NRZ7 376 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 RCOR1Q9UKL0 485 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 NME7Q9Y5B8 376 aa19.1■□□□□ 0.65
HDDC3-205ENST00000559898 FANCMQ8IYD8 2048 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 PRR23AA6NEV1 266 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 ACTN4O43707 911 aaKnown RBP19.09■□□□□ 0.65
HDDC3-205ENST00000559898 PRAMEF12O95522 483 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 HAPLN1P10915 354 aaPredicted RBP19.09■□□□□ 0.65
HDDC3-205ENST00000559898 PLD1Q13393 1074 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 UNC13DQ70J99 1090 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 TMEM150AQ86TG1 271 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 NT5DC4Q86YG4 428 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 ZNF687Q8N1G0 1237 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 PLEKHO2Q8TD55 490 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 KCNG4Q8TDN1 519 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 ZFYVE19Q96K21 471 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 ZNF560Q96MR9 790 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 TRMT61BQ9BVS5 477 aaKnown RBP19.09■□□□□ 0.65
HDDC3-205ENST00000559898 ATXN3LQ9H3M9 355 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 SLITRK6Q9H5Y7 841 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 INTS13Q9NVM9 706 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 DSEQ9UL01 958 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 SNX9Q9Y5X1 595 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 CFAP54Q96N23 3096 aa19.09■□□□□ 0.65
HDDC3-205ENST00000559898 A0A1B0GVL5 298 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 ARNTLO00327 626 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 ATP2C2O75185 946 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 SOX9P48436 509 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 CYP2J2P51589 502 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 PRKCQQ04759 706 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 SOWAHAQ2M3V2 549 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 WDR44Q5JSH3 913 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 GPR158Q5T848 1215 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 ARID3BQ8IVW6 561 aaPredicted RBP19.08■□□□□ 0.64
HDDC3-205ENST00000559898 THEM5Q8N1Q8 247 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 TTC8Q8TAM2 541 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 FAM200AQ8TCP9 573 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 ZNF516Q92618 1163 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 BRD9Q9H8M2 597 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 TRPV4Q9HBA0 871 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 DDX43Q9NXZ2 648 aaKnown RBP19.08■□□□□ 0.64
HDDC3-205ENST00000559898 GTF3C4Q9UKN8 822 aa19.08■□□□□ 0.64
HDDC3-205ENST00000559898 EIF3DO15371 548 aaKnown RBP eCLIP19.07■□□□□ 0.64
HDDC3-205ENST00000559898 CST3P01034 146 aaPredicted RBP19.07■□□□□ 0.64
HDDC3-205ENST00000559898 TMEM191BP0C7N4 346 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 SP9P0CG40 484 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 HMGA1P17096 107 aaKnown RBP19.07■□□□□ 0.64
HDDC3-205ENST00000559898 PSMC3P17980 439 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 PAX3P23760 479 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 CYP2F1P24903 491 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 LMO2P25791 158 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 PFKPQ01813 784 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 C1orf210Q8IVY1 113 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 RIN3Q8TB24 985 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 CACTINQ8WUQ7 758 aaKnown RBP19.07■□□□□ 0.64
HDDC3-205ENST00000559898 KBTBD7Q8WVZ9 684 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 SHDQ96IW2 340 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 IRF2BPLQ9H1B7 796 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 ITGA11Q9UKX5 1188 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 NDRG2Q9UN36 371 aaKnown RBP19.07■□□□□ 0.64
HDDC3-205ENST00000559898 GREB1Q4ZG55 1949 aa19.07■□□□□ 0.64
HDDC3-205ENST00000559898 PTPRDP23468 1912 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 MYBPHLA2RUH7 354 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 ZNF233A6NK53 670 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 PRR29P0C7W0 189 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 PFKFB1P16118 471 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 CASP4P49662 377 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 RBP5P82980 135 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 AMPD3Q01432 767 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 STK4Q13043 487 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 DDR2Q16832 855 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 MFSD6LQ8IWD5 586 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 LRRC52Q8N7C0 313 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 LEMD2Q8NC56 503 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 KIAA0895Q8NCT3 520 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 LEO1Q8WVC0 666 aaPredicted RBP19.06■□□□□ 0.64
HDDC3-205ENST00000559898 PAGE5Q96GU1 130 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 SLC46A2Q9BY10 475 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 LRRC27Q9C0I9 530 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 GDAP2Q9NXN4 497 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 FAM13BQ9NYF5 915 aa19.06■□□□□ 0.64
HDDC3-205ENST00000559898 ZNF638Q14966 1978 aaKnown RBP19.06■□□□□ 0.64
HDDC3-205ENST00000559898 GABRDO14764 452 aa19.05■□□□□ 0.64
HDDC3-205ENST00000559898 HUS1O60921 280 aa19.05■□□□□ 0.64
HDDC3-205ENST00000559898 TADA3O75528 432 aa19.05■□□□□ 0.64
HDDC3-205ENST00000559898 DLATP10515 647 aaKnown RBP19.05■□□□□ 0.64
HDDC3-205ENST00000559898 HOXC13P31276 330 aa19.05■□□□□ 0.64
HDDC3-205ENST00000559898 PNPLA4P41247 253 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms