RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 THAP12O43422 761 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 SPOPO43791 374 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 CXCL10P02778 98 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 HOXA11P31270 313 aaPredicted RBP18.9■□□□□ 0.62
SNX1-208ENST00000559844 ZNF699Q32M78 642 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 PLEKHG4Q58EX7 1191 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 SEL1L2Q5TEA6 688 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 SND1Q7KZF4 910 aaKnown RBP eCLIP18.9■□□□□ 0.629e-6■■□□□ 12.1
SNX1-208ENST00000559844 CDR2LQ86X02 465 aaPredicted RBP18.9■□□□□ 0.62
SNX1-208ENST00000559844 DBF4BQ8NFT6 615 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 CD101Q93033 1021 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 MED4Q9NPJ6 270 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 NR2E3Q9Y5X4 410 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 SART1O43290 800 aaKnown RBP18.9■□□□□ 0.62
SNX1-208ENST00000559844 CALCAP01258 141 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 CTNNA1P35221 906 aaKnown RBP18.9■□□□□ 0.62
SNX1-208ENST00000559844 AARSP49588 968 aaKnown RBP eCLIP18.9■□□□□ 0.62
SNX1-208ENST00000559844 OSTNP61366 133 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 NOMO3P69849 1222 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 NOTUMQ6P988 496 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 MON1BQ7L1V2 547 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 PHF13Q86YI8 300 aaPredicted RBP18.9■□□□□ 0.62
SNX1-208ENST00000559844 EFCAB13Q8IY85 973 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 CPA5Q8WXQ8 436 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 SEPT8Q92599 483 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 CYFIP2Q96F07 1278 aa18.9■□□□□ 0.62
SNX1-208ENST00000559844 A0A1B0GUA9 196 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 STAG3L1P0CL83 205 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 CXCL8P10145 99 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 AXLP30530 894 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 CEP120Q8N960 986 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 ALG3Q92685 438 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 HINFPQ9BQA5 517 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 PDZD7Q9H5P4 517 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 ASB7Q9H672 318 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 MRPL47Q9HD33 250 aaKnown RBP18.89■□□□□ 0.61
SNX1-208ENST00000559844 ST7Q9NRC1 585 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 CHORDC1Q9UHD1 332 aaPredicted RBP18.89■□□□□ 0.61
SNX1-208ENST00000559844 PCDHA3Q9Y5H8 950 aa18.89■□□□□ 0.61
SNX1-208ENST00000559844 SLC1A1P43005 524 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 PEX5P50542 639 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 FPGSQ05932 587 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 CUL1Q13616 776 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 TWF2Q6IBS0 349 aaKnown RBP18.88■□□□□ 0.61
SNX1-208ENST00000559844 FAM71BQ8TC56 605 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 VWCEQ96DN2 955 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 PLVAPQ9BX97 442 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 DDX47Q9H0S4 455 aaKnown RBP18.88■□□□□ 0.61
SNX1-208ENST00000559844 ANAPC7Q9UJX3 599 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 SCINQ9Y6U3 715 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 LSM8O95777 96 aaKnown RBP18.88■□□□□ 0.61
SNX1-208ENST00000559844 ITGA4P13612 1032 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 C1QBPQ07021 282 aaKnown RBP18.88■□□□□ 0.61
SNX1-208ENST00000559844 TCTN1Q2MV58 587 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 APBB1IPQ7Z5R6 666 aaPredicted RBP18.88■□□□□ 0.61
SNX1-208ENST00000559844 WHAMMQ8TF30 809 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 ZNF606Q8WXB4 792 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 CASKIN2Q8WXE0 1202 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 IFT81Q8WYA0 676 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 KRT35Q92764 455 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 APBB2Q92870 758 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 LBHD1Q9BQE6 289 aaPredicted RBP18.88■□□□□ 0.61
SNX1-208ENST00000559844 XYLT2Q9H1B5 865 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 CHST12Q9NRB3 414 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 CISHQ9NSE2 258 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 ADAM22Q9P0K1 906 aa18.88■□□□□ 0.61
SNX1-208ENST00000559844 H3BQF6 201 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 MGEA5O60502 916 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 ACRP10323 421 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 RRM1P23921 792 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 CARSP49589 748 aaKnown RBP18.87■□□□□ 0.61
SNX1-208ENST00000559844 RWDD2BP57060 319 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 ZNF211Q13398 564 aaPredicted RBP18.87■□□□□ 0.61
SNX1-208ENST00000559844 PPIGQ13427 754 aaKnown RBP eCLIP18.87■□□□□ 0.612e-7■■□□□ 12.1
SNX1-208ENST00000559844 BTBD6Q96KE9 485 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 ADAM2Q99965 735 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 ADPGKQ9BRR6 497 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 FTHL17Q9BXU8 183 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 IL23AQ9NPF7 189 aa18.87■□□□□ 0.61
SNX1-208ENST00000559844 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.87■□□□□ 0.61
SNX1-208ENST00000559844 LACTBL1A8MY62 500 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 BHMG1C9JSJ3 638 aaPredicted RBP18.86■□□□□ 0.61
SNX1-208ENST00000559844 MYO1FO00160 1098 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 POLR3GO15318 223 aaPredicted RBP18.86■□□□□ 0.61
SNX1-208ENST00000559844 PFKMP08237 780 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 ATICP31939 592 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 CNKSR3Q6P9H4 555 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 SLC27A1Q6PCB7 646 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 ZNF518BQ9C0D4 1074 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 NFU1Q9UMS0 254 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 PDE4DIPQ5VU43 2346 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 CD58P19256 250 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 ASPAP45381 313 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 DSC3Q14574 896 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 ZNF667Q5HYK9 610 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 GDAP1L1Q96MZ0 367 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 C11orf70Q9BRQ4 267 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 EIF2AQ9BY44 585 aaKnown RBP18.86■□□□□ 0.61
SNX1-208ENST00000559844 LCMT1Q9UIC8 334 aa18.86■□□□□ 0.61
SNX1-208ENST00000559844 CITO14578 2027 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms