RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 WBP1LQ9NX94 342 aa13.24□□□□□ -0.29
SHMT2-233ENST00000557529 ANAPC7Q9UJX3 599 aa13.24□□□□□ -0.29
SHMT2-233ENST00000557529 OGDHLQ9ULD0 1010 aa13.24□□□□□ -0.29
SHMT2-233ENST00000557529 TRIP11Q15643 1979 aa13.24□□□□□ -0.29
SHMT2-233ENST00000557529 CCDC66A2RUB6 948 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 DDX3YO15523 660 aaKnown RBP13.23□□□□□ -0.29
SHMT2-233ENST00000557529 SPOPO43791 374 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 HUS1O60921 280 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 MICAL2O94851 1124 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 CCL5P13501 91 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 SELPP16109 830 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 COMTP21964 271 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 PAX3P23760 479 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 LILRA4P59901 499 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 MAMLD1Q13495 774 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 SOWAHAQ2M3V2 549 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 LCLAT1Q6UWP7 414 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 AGMOQ6ZNB7 445 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 ECHDC2Q86YB7 292 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 MMGT1Q8N4V1 131 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 WDTC1Q8N5D0 677 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 GSTCDQ8NEC7 633 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 APPL2Q8NEU8 664 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 SPATA4Q8NEY3 305 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 OR6B3Q8NGW1 331 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 LPPQ93052 612 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 FTHL17Q9BXU8 183 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 RNF208Q9H0X6 261 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 GOLGA2P5Q9HBQ8 144 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 RGS18Q9NS28 235 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 RNF19AQ9NV58 838 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 WDR35Q9P2L0 1181 aa13.23□□□□□ -0.29
SHMT2-233ENST00000557529 CHORDC1Q9UHD1 332 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-233ENST00000557529 MEIS3P2A8K0S8 358 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 A8MXQ7 604 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 M0QYV0 167 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 PGRMC1O00264 195 aaKnown RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 SPTLC1O15269 473 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 CEP104O60308 925 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 CAPN15O75808 1086 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 SETSIPP0DME0 302 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 HSPA6P17066 643 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 WARSP23381 471 aaKnown RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 CTNNA2P26232 953 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 GNL1P36915 607 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 GSCP56915 257 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 ORC1Q13415 861 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 PTPROQ16827 1216 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 ARHGAP17Q68EM7 881 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 DNAJC24Q6P3W2 148 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 LRRC8DQ7L1W4 858 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 FAM126BQ8IXS8 530 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 CRYBG2Q8N1P7 616 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 RASGEF1CQ8N431 466 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 NOA1Q8NC60 698 aaKnown RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 RNF169Q8NCN4 708 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 C3orf20Q8ND61 904 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 FEZF2Q8TBJ5 459 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 DDX27Q96GQ7 796 aaKnown RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 NAP1L3Q99457 506 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.22□□□□□ -0.297e-8■■□□□ 13.7
SHMT2-233ENST00000557529 OSBPL7Q9BZF2 842 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 ARGLU1Q9NWB6 273 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 IP6K2Q9UHH9 426 aa13.22□□□□□ -0.29
SHMT2-233ENST00000557529 TTC7AQ9ULT0 858 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-233ENST00000557529 PITPNM1O00562 1244 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 PODXLO00592 558 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 INPPL1O15357 1258 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 PROSCO94903 275 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 EOMESO95936 686 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 MAN1A1P33908 653 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 CTNNA1P35221 906 aaKnown RBP13.21□□□□□ -0.29
SHMT2-233ENST00000557529 GPD2P43304 727 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 SCNN1GP51170 649 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 SNX16P57768 344 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 GRIK3Q13003 919 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 MBTPS1Q14703 1052 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 MTFR1Q15390 333 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 C2CD6Q53TS8 623 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 SLC24A5Q71RS6 500 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 ACOT1Q86TX2 421 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 ZNF598Q86UK7 904 aaKnown RBP13.21□□□□□ -0.29
SHMT2-233ENST00000557529 ADGRF2Q8IZF7 708 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-233ENST00000557529 IPO4Q8TEX9 1081 aaKnown RBP13.21□□□□□ -0.29
SHMT2-233ENST00000557529 KBTBD7Q8WVZ9 684 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 CD101Q93033 1021 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 C18orf8Q96DM3 657 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 MS4A14Q96JA4 679 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 TNIP3Q96KP6 325 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 UROC1Q96N76 676 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 SYNCQ9H7C4 482 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 HESX1Q9UBX0 185 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 TSPAN16Q9UKR8 245 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 L1RE1Q9UN81 338 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 SCN1AP35498 2009 aa13.21□□□□□ -0.29
SHMT2-233ENST00000557529 TCRBV5S1A1TA0A578 114 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 TARSL2A2RTX5 802 aaKnown RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 TMEM191CA6NGB0 347 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 C9IYK1 514 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms