RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	TBX22	Q9Y458	520 aa		3.15	□□□□□ -1.91
SLIRP-208	ENST00000556956	HYOU1	Q9Y4L1	999 aa		3.15	□□□□□ -1.91
SLIRP-208	ENST00000556956	RGPD1	P0DJD0	1748 aa		3.15	□□□□□ -1.91
SLIRP-208	ENST00000556956	RGPD8	O14715	1765 aa	Predicted RBP	3.15	□□□□□ -1.91
SLIRP-208	ENST00000556956	MAP2	P11137	1827 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TUBGCP6	Q96RT7	1819 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	USP54	Q70EL1	1684 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ABCC12	Q96J65	1359 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	NALCN	Q8IZF0	1738 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956		A0A087X1B8	175 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRBV23-1	A0A0A0MS06	115 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956		A0A0G2JLW4	131 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956		A0A0U1RQJ8	604 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	BICDL2	A1A5D9	508 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ANKRD18B	A2A2Z9	1011 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	GRID2IP	A4D2P6	1211 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	GMNC	A6NCL1	334 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	LGALS16	A8MUM7	142 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	BTBD18	B2RXH4	712 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	MYO1F	O00160	1098 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	PES1	O00541	588 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	GPAA1	O43292	621 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	SRGAP2	O75044	1071 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	EFCAB14	O75071	495 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	RASSF9	O75901	435 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	DNAJC8	O75937	253 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	NEBL	O76041	1014 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	FGFR1OP	O95684	399 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM107A	O95990	144 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	MYL1	P05976	194 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	SRGN	P10124	158 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAH	P16930	419 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	NR1D1	P20393	614 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	HOXA7	P31268	230 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	LSP1	P33241	339 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	KRT2	P35908	639 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCT6A	P40227	531 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TOB1	P50616	345 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CLNS1A	P54105	237 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	HERVK_113	P62684	666 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	SARNP	P82979	210 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	IFT88	Q13099	833 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	PDCL	Q13371	301 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ADAM9	Q13443	819 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TUSC3	Q13454	348 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	BIRC3	Q13489	604 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	WTAP	Q15007	396 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	UBE3C	Q15386	1083 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	NTRK3	Q16288	839 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CFAP221	Q4G0U5	840 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	LACTB2	Q53H82	288 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TTMP	Q5BVD1	217 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM47C	Q5HY64	1035 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	FIGN	Q5HY92	759 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	PRR31	Q5SQ13	230 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	FKBP15	Q5T1M5	1219 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	AGBL2	Q5U5Z8	902 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	NAA35	Q5VZE5	725 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRMT10B	Q6PF06	316 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF790	Q6PG37	636 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	APOA5	Q6Q788	366 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	KCNT2	Q6UVM3	1135 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	C6orf89	Q6UWU4	347 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CYB5R4	Q7L1T6	521 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	C16orf59	Q7L2K0	433 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	MTDH	Q86UE4	582 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	STK32C	Q86UX6	486 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	RAB11FIP4	Q86YS3	637 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	GRAMD1C	Q8IYS0	662 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	KLHL36	Q8N4N3	616 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	MREG	Q8N565	214 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	SPATA4	Q8NEY3	305 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	UHMK1	Q8TAS1	419 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TCP11	Q8WWU5	503 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATRIP	Q8WXE1	791 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	PHKB	Q93100	1093 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ARL8A	Q96BM9	186 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	LRRC45	Q96CN5	670 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	DHTKD1	Q96HY7	919 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATP6V1G3	Q96LB4	118 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	RNPC3	Q96LT9	517 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC42	Q96M95	316 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC43	Q96MW1	224 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	AIFM3	Q96NN9	605 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZIM3	Q96PE6	472 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	MED15	Q96RN5	788 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCT8L2	Q96SF2	557 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CHP1	Q99653	195 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	LRRC1	Q9BTT6	524 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRIM8	Q9BZR9	551 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CDIP1	Q9H305	208 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATP6V0A4	Q9HBG4	840 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	LY9	Q9HBG7	655 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CABP5	Q9NP86	173 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	GDF3	Q9NR23	364 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	EXOC1	Q9NV70	894 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	CWC25	Q9NXE8	425 aa	Predicted RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	HDAC6	Q9UBN7	1215 aa		3.14	□□□□□ -1.91

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