RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 LIN9Q5TKA1 542 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 TMC5Q6UXY8 1006 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 LRRTM3Q86VH5 581 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 OR6B3Q8NGW1 331 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-225ENST00000556798 SPATA18Q8TC71 538 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 NIF3L1Q9GZT8 377 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 NAT10Q9H0A0 1025 aaKnown RBP18.71■□□□□ 0.59
SHMT2-225ENST00000556798 SNX25Q9H3E2 840 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 PLEKHA4Q9H4M7 779 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 SFXN1Q9H9B4 322 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 CYP4F11Q9HBI6 524 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 FANCLQ9NW38 375 aa18.71■□□□□ 0.59
SHMT2-225ENST00000556798 AFF4Q9UHB7 1163 aaKnown RBP18.71■□□□□ 0.59
SHMT2-225ENST00000556798 MTMR11A4FU01 709 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 ATP2C2O75185 946 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 SEC24AO95486 1093 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 C1RP00736 705 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 PRKCSHP14314 528 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-225ENST00000556798 ATF2P15336 505 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 HOXB8P17481 243 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-225ENST00000556798 TSPY1Q01534 308 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 NCAPHQ15003 741 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 MAN2A1Q16706 1144 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 TCP11X2Q5H9J9 407 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 INTS6LQ5JSJ4 861 aaKnown RBP18.7■□□□□ 0.58
SHMT2-225ENST00000556798 CDKAL1Q5VV42 579 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 TPGS2Q68CL5 300 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 ELMSAN1Q6PJG2 1045 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.7■□□□□ 0.58
SHMT2-225ENST00000556798 SMRP1Q8NCR6 262 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 TATDN2Q93075 761 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 SYT15Q9BQS2 421 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 ACBD6Q9BR61 282 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 S1PR5Q9H228 398 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 CRISPLD1Q9H336 500 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 DPEP3Q9H4B8 488 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 TMLHEQ9NVH6 421 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 DPP7Q9UHL4 492 aa18.7■□□□□ 0.58
SHMT2-225ENST00000556798 GRXCR2A6NFK2 248 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 PRRG1O14668 218 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 MBTPS2O43462 519 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 ZMYND10O75800 440 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 PCSK1P29120 753 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 ELF1P32519 619 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 GNL1P36915 607 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-225ENST00000556798 ORC1Q13415 861 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 SMAD4Q13485 552 aaKnown RBP18.69■□□□□ 0.58
SHMT2-225ENST00000556798 WDR44Q5JSH3 913 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 PPM1LQ5SGD2 360 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 PTCRAQ6ISU1 281 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-225ENST00000556798 DHX40Q8IX18 779 aaKnown RBP18.69■□□□□ 0.58
SHMT2-225ENST00000556798 TTC9BQ8N6N2 239 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 ATAD1Q8NBU5 361 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 HDAC7Q8WUI4 952 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 PKMYT1Q99640 499 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 ARID3AQ99856 593 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 LPIN3Q9BQK8 851 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 TUBGCP2Q9BSJ2 902 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 BCO2Q9BYV7 579 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 TAB2Q9NYJ8 693 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 HMGXB4Q9UGU5 601 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 USP15Q9Y4E8 981 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-225ENST00000556798 NOTCH4Q99466 2003 aa18.69■□□□□ 0.58
SHMT2-225ENST00000556798 CCDC195A0A1B0GUA6 201 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 MYBPHLA2RUH7 354 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 A8MXQ7 604 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 PMM2O15305 246 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 P4HA2O15460 535 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 CCL16O15467 120 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 CD58P19256 250 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 EEF1GP26641 437 aaKnown RBP18.68■□□□□ 0.58
SHMT2-225ENST00000556798 ZNF165P49910 485 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 CETN1Q12798 172 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 DUSP4Q13115 394 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 MIIPQ5JXC2 388 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 DCP1BQ8IZD4 617 aaKnown RBP18.68■□□□□ 0.58
SHMT2-225ENST00000556798 BPIFA3Q9BQP9 254 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 CRACR2AQ9BSW2 395 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 HSD3B7Q9H2F3 369 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 CRTAC1Q9NQ79 661 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 ABI2Q9NYB9 513 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-225ENST00000556798 GCNT4Q9P109 453 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 GTF3C4Q9UKN8 822 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 CDH9Q9ULB4 789 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 SLC27A5Q9Y2P5 690 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 INSL5Q9Y5Q6 135 aa18.68■□□□□ 0.58
SHMT2-225ENST00000556798 PES1O00541 588 aaKnown RBP18.67■□□□□ 0.58
SHMT2-225ENST00000556798 SOAT2O75908 522 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 IL9P15248 144 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 MRPS5P82675 430 aaKnown RBP18.67■□□□□ 0.58
SHMT2-225ENST00000556798 KRT31Q15323 416 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 AAK1Q2M2I8 961 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 VWA3BQ502W6 1294 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 CES5AQ6NT32 575 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 CCDC149Q6ZUS6 474 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 TCEAL8Q8IYN2 117 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 LMO3Q8TAP4 145 aa18.67■□□□□ 0.58
SHMT2-225ENST00000556798 ATXN2LQ8WWM7 1075 aaKnown RBP18.67■□□□□ 0.58
SHMT2-225ENST00000556798 MYLPFQ96A32 169 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms