RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CCDC149Q6ZUS6 474 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 MICALCLQ6ZW33 695 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 LCORLQ8N3X6 602 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 Q96MF0 132 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 SORCS2Q96PQ0 1159 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 BHMT2Q9H2M3 363 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 KCTD5Q9NXV2 234 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.75□□□□□ -1.49
SCFD1-221ENST00000556534 PLEKHM1Q9Y4G2 1056 aa5.75□□□□□ -1.49
SCFD1-221ENST00000556534 MAST3O60307 1309 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 SPATA31A3Q5VYP0 1347 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 DCLK1O15075 740 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 TBX3O15119 743 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 SRGNP10124 158 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 SLC7A1P30825 629 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 GCLCP48506 637 aaPredicted RBP5.74□□□□□ -1.49
SCFD1-221ENST00000556534 NDUFV1P49821 464 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 CACNB3P54284 484 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 INHBCP55103 352 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 TAP1Q03518 808 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 FPGSQ05932 587 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 SF3B3Q15393 1217 aaKnown RBP5.74□□□□□ -1.49
SCFD1-221ENST00000556534 LAIR1Q6GTX8 287 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 MRGPRGQ86SM5 289 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 FAM9AQ8IZU1 332 aaPredicted RBP5.74□□□□□ -1.49
SCFD1-221ENST00000556534 SLC44A3Q8N4M1 653 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 LRTOMTQ8WZ04 291 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 MAML1Q92585 1016 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 PTCD3Q96EY7 689 aaKnown RBP5.74□□□□□ -1.49
SCFD1-221ENST00000556534 SLC46A1Q96NT5 459 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 TTPALQ9BTX7 342 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 CYP4F11Q9HBI6 524 aa5.74□□□□□ -1.49
SCFD1-221ENST00000556534 EPN1Q9Y6I3 576 aaPredicted RBP5.74□□□□□ -1.49
SCFD1-221ENST00000556534 A0A087WWL8 130 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 CFAP69A5D8W1 941 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 PROM1O43490 865 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 SOAT2O75908 522 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 PPP3CBP16298 524 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 TYRP1P17643 537 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 PROZP22891 400 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 AVPR1BP47901 424 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 SLC11A2P49281 568 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 ZNF134P52741 427 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 SEC24CP53992 1094 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 FAM193AP78312 1265 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 FOXI1Q12951 378 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 ZNF783Q6ZMS7 281 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 SLC30A5Q8TAD4 765 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 LPIN2Q92539 896 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 HEPHQ9BQS7 1158 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 SMURF2Q9HAU4 748 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 CASS4Q9NQ75 786 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 STK32BQ9NY57 414 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 USP19O94966 1318 aa5.73□□□□□ -1.49
SCFD1-221ENST00000556534 A0A0B4J269 797 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 MARCH6O60337 910 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 THP07101 528 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 ITGALP20701 1170 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 VIPR2P41587 438 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 UCP3P55916 312 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 TUBB3Q13509 450 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 SEMA5AQ13591 1074 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 POLD3Q15054 466 aaPredicted RBP5.72□□□□□ -1.49
SCFD1-221ENST00000556534 KIAA0753Q2KHM9 967 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 LONRF3Q496Y0 759 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 RNF220Q5VTB9 566 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 VWA1Q6PCB0 445 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 Q6ZNX1 250 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 FAM109AQ8N4B1 249 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 OR6B3Q8NGW1 331 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 MYCBPAPQ8TBZ2 947 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 OSBPL9Q96SU4 736 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 AIFM2Q9BRQ8 373 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 TTYH3Q9C0H2 523 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 IKZF4Q9H2S9 585 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 TOR3AQ9H497 397 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 DDX21Q9NR30 783 aaKnown RBP eCLIP5.72□□□□□ -1.49
SCFD1-221ENST00000556534 XPR1Q9UBH6 696 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.72□□□□□ -1.49
SCFD1-221ENST00000556534 RAD54BQ9Y620 910 aa5.72□□□□□ -1.49
SCFD1-221ENST00000556534 GOLIM4O00461 696 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 BTN3A1O00481 513 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 RAMP2O60895 175 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 ESRRBO95718 433 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 PEX2P28328 305 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 ADRA1BP35368 520 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 MPLP40238 635 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 HNRNPMP52272 730 aaKnown RBP eCLIP5.71□□□□□ -1.51e-6■■■□□ 16.6
SCFD1-221ENST00000556534 LOXL3P58215 753 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 COL10A1Q03692 680 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 FSTL1Q12841 308 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 MPP3Q13368 585 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 RBM20Q5T481 1227 aaKnown RBP5.71□□□□□ -1.5
SCFD1-221ENST00000556534 DARS2Q6PI48 645 aaKnown RBP5.71□□□□□ -1.5
SCFD1-221ENST00000556534 DNAJC5GQ8N7S2 189 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 SUPT20HQ8NEM7 779 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 CHFRQ96EP1 664 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 AGAP2Q99490 1192 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 TMX2Q9Y320 296 aa5.71□□□□□ -1.5
SCFD1-221ENST00000556534 A0A087X1B8 175 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms