RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TIPINQ9BVW5 301 aa15.62■□□□□ 0.09
CUX1-215ENST00000556210 CEP41Q9BYV8 373 aa15.62■□□□□ 0.09
CUX1-215ENST00000556210 XPNPEP1Q9NQW7 623 aa15.62■□□□□ 0.09
CUX1-215ENST00000556210 MAFGO15525 162 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 PECAM1P16284 738 aaPredicted RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 KRT4P19013 534 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 NRLP54845 237 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 NME3Q13232 169 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 CFAP157Q5JU67 520 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 TREML2Q5T2D2 321 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 CAPRIN2Q6IMN6 1127 aaKnown RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 CCDC62Q6P9F0 684 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 TRMT10CQ7L0Y3 403 aaKnown RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 STMN2Q93045 179 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 DCLK3Q9C098 648 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 C12orf65Q9H3J6 166 aaKnown RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 GLI3P10071 1580 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 ENO4A6NNW6 628 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 A8MXQ7 604 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 TTC4O95801 387 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 MYCP01106 439 aaPredicted RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 MYBL1P10243 752 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 CYP2C8P10632 490 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 FNTAP49354 379 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 CTCFP49711 727 aaPredicted RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 GPR162Q16538 588 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 ZNF572Q7Z3I7 529 aaPredicted RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 SLC9A9Q8IVB4 645 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 PIK3R5Q8WYR1 880 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 ABCF3Q9NUQ8 709 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 ARHGAP42A6NI28 874 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 IRF6O14896 467 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 NPTXRO95502 500 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 PDHA1P08559 390 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 NOVP48745 357 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 SESN2P58004 480 aaPredicted RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 KDELC2Q7Z4H8 507 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 ACOT1Q86TX2 421 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 DNAAF3Q8N9W5 541 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 CLMNQ96JQ2 1002 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 CPSF2Q9P2I0 782 aaKnown RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 XPO7Q9UIA9 1087 aaKnown RBP15.61■□□□□ 0.09
CUX1-215ENST00000556210 CHD4Q14839 1912 aa15.61■□□□□ 0.09
CUX1-215ENST00000556210 TCF4P15884 667 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 RFC1P35251 1148 aaPredicted RBP15.6■□□□□ 0.09
CUX1-215ENST00000556210 ELF3P78545 371 aaPredicted RBP15.6■□□□□ 0.09
CUX1-215ENST00000556210 LRRC37BQ96QE4 947 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 INPP5FQ9Y2H2 1132 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 HES2Q9Y543 173 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 NAMPTP43490 491 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 TTLL4Q14679 1199 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 RCOR2Q8IZ40 523 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 PPFIBP2Q8ND30 876 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 OGTO15294 1046 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 DRD4P21917 467 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 MUTP22033 750 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 SDC4P31431 198 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 ARL1P40616 181 aaPredicted RBP15.6■□□□□ 0.09
CUX1-215ENST00000556210 PHKA2P46019 1235 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 CPA2P48052 419 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 FKBP1AP62942 108 aaKnown RBP15.6■□□□□ 0.09
CUX1-215ENST00000556210 MAMLD1Q13495 774 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 AUHQ13825 339 aaKnown RBP15.6■□□□□ 0.09
CUX1-215ENST00000556210 EEF1DP3Q658K8 133 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 TRIM72Q6ZMU5 477 aa15.6■□□□□ 0.09
CUX1-215ENST00000556210 SMIM24O75264 130 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 LUC7L3O95232 432 aaKnown RBP15.59■□□□□ 0.09
CUX1-215ENST00000556210 RASSF2P50749 326 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 EFNA5P52803 228 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 SP2Q02086 613 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 CAPSQ13938 189 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 CRYMQ14894 314 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 APBB1IPQ7Z5R6 666 aaPredicted RBP15.59■□□□□ 0.09
CUX1-215ENST00000556210 KCTD17Q8N5Z5 321 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 MIEF2Q96C03 454 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 SPATC1LQ9H0A9 340 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 SNX25Q9H3E2 840 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 NINJ2Q9NZG7 142 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 GGA2Q9UJY4 613 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 DYNC1LI2O43237 492 aaPredicted RBP15.59■□□□□ 0.09
CUX1-215ENST00000556210 TMPRSS15P98073 1019 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 VGLL4Q14135 290 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 LVRNQ6Q4G3 990 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 CEP128Q6ZU80 1094 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 ZNF516Q92618 1163 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 HPDLQ96IR7 371 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 PPP1R36Q96LQ0 422 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 FIZ1Q96SL8 496 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 UBN1Q9NPG3 1134 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 FDX1P10109 184 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 TARSP26639 723 aaKnown RBP15.59■□□□□ 0.09
CUX1-215ENST00000556210 CHADLQ6NUI6 762 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 C17orf75Q9HAS0 396 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 NOCTQ9UK39 431 aaKnown RBP15.59■□□□□ 0.09
CUX1-215ENST00000556210 ARL2BPQ9Y2Y0 163 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 FIS1Q9Y3D6 152 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 UBR2Q8IWV8 1755 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 FAM47DPA6NHR8 397 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 KRT7P08729 469 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 RARBP10826 455 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms