RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 PMS1P54277 932 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 MYL7Q01449 175 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 SMARCB1Q12824 385 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 PLD1Q13393 1074 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 ADAM9Q13443 819 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 WDR72Q3MJ13 1102 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 ZACNQ401N2 412 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 PRSS36Q5K4E3 855 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 ISM2Q6H9L7 571 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 IQCEQ6IPM2 695 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 INTS8Q75QN2 995 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 ALYREFQ86V81 257 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 DCP1BQ8IZD4 617 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 HS6ST3Q8IZP7 471 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 ADSSL1Q8N142 457 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 ST13P5Q8NFI4 369 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 SPPL2BQ8TCT7 592 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 C2orf15Q8WU43 125 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 RSAD2Q8WXG1 361 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 SYAP1Q96A49 352 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 MMS19Q96T76 1030 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 PKMYT1Q99640 499 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 SEPT5Q99719 369 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 ACBD6Q9BR61 282 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 GTPBP4Q9BZE4 634 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 KCNK12Q9HB15 430 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 HSFX1Q9UBD0 423 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 TRIM49BA6NDI0 452 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ANHXE9PGG2 379 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 NRG2O14511 850 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 CLSTN1O94985 981 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 VNN1O95497 513 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ATF6P18850 670 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 BMP6P22004 513 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 WARSP23381 471 aaKnown RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 PCSK1P29120 753 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ATICP31939 592 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 PSMC2P35998 433 aaKnown RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 CCR2P41597 374 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ALDH1A3P47895 512 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 LHX1P48742 406 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 EPHA5P54756 1037 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 PSMC1P62191 440 aaKnown RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 TNNC1P63316 161 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 SIGLEC14Q08ET2 396 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 HTR4Q13639 388 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 NCOA4Q13772 614 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ZNF699Q32M78 642 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 MGAT5BQ3V5L5 792 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 TRIM67Q6ZTA4 783 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 PDZD4Q76G19 769 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 SV2AQ7L0J3 742 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 DPH6Q7L8W6 267 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 UBALD2Q8IYN6 164 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 TCEAL4Q96EI5 215 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ZNF512Q96ME7 567 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 TSG101Q99816 390 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 LPIN3Q9BQK8 851 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 MRPL45Q9BRJ2 306 aaKnown RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 VRTNQ9H8Y1 702 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ASAH2Q9NR71 780 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 IGSF9Q9P2J2 1179 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 NXF1Q9UBU9 619 aaKnown RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 NME7Q9Y5B8 376 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 ZFP37Q9Y6Q3 630 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-219ENST00000555563 TECTAO75443 2155 aa14.7□□□□□ -0.06
SHMT2-219ENST00000555563 TMEM221A6NGB7 291 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 M0R296 226 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 BIN1O00499 593 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 IKBKBO14920 756 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 ATP2C2O75185 946 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 HAPLN1P10915 354 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-219ENST00000555563 MYL4P12829 197 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 KRT13P13646 458 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 CD44P16070 742 aaKnown RBP14.69□□□□□ -0.06
SHMT2-219ENST00000555563 LMO2P25791 158 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 PIK3CAP42336 1068 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 TUFMP49411 452 aaKnown RBP14.69□□□□□ -0.06
SHMT2-219ENST00000555563 EPHB3P54753 998 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 PPP3CAQ08209 521 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 TDGQ13569 410 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 MORC3Q14149 939 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 NFE2Q16621 373 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-219ENST00000555563 ANKRD40Q6AI12 368 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 POTEHQ6S545 545 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 TMC8Q8IU68 726 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 ZC3H3Q8IXZ2 948 aaKnown RBP14.69□□□□□ -0.06
SHMT2-219ENST00000555563 LEMD2Q8NC56 503 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 ELMO3Q96BJ8 720 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 ASIC4Q96FT7 647 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 SYT15Q9BQS2 421 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 PI4K2AQ9BTU6 479 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 MKNK1Q9BUB5 465 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 LRRC3Q9BY71 257 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 SMYD3Q9H7B4 428 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 GTF3C4Q9UKN8 822 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 CDH9Q9ULB4 789 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 PCDHB5Q9Y5E4 795 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 NUMBLQ9Y6R0 609 aa14.69□□□□□ -0.06
SHMT2-219ENST00000555563 MYBPHLA2RUH7 354 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms