RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 TMEM209Q96SK2 561 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 KXD1Q9BQD3 176 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 MTMR12Q9C0I1 747 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 BLZF1Q9H2G9 400 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 SERTAD1Q9UHV2 236 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 CA14Q9ULX7 337 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 L1RE1Q9UN81 338 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 SIT1Q9Y3P8 196 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 PCDHB5Q9Y5E4 795 aa12.73□□□□□ -0.37
VRK1-204ENST00000555351 KANSL1LA0AUZ9 987 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 PI15O43692 258 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 KLRC4O43908 158 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 KIF20AO95235 890 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 STAU1O95793 577 aaKnown RBP12.72□□□□□ -0.37
VRK1-204ENST00000555351 KRT19P08727 400 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 MYL4P12829 197 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 GLULP15104 373 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 PSMC3P17980 439 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 MRE11P49959 708 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 AP3M2P53677 418 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 CYP24A1Q07973 514 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 BFSP1Q12934 665 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 MLF2Q15773 248 aaPredicted RBP12.72□□□□□ -0.37
VRK1-204ENST00000555351 SLC44A4Q53GD3 710 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 TANGO2Q6ICL3 276 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 POTEHQ6S545 545 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 HS6ST3Q8IZP7 471 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 PJA1Q8NG27 643 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 IRF7Q92985 503 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 FUBP3Q96I24 572 aaKnown RBP eCLIP12.72□□□□□ -0.37
VRK1-204ENST00000555351 HPDLQ96IR7 371 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 CEP295NLQ96MC4 621 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 FNBP1Q96RU3 617 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 CGRRF1Q99675 332 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 TRMT61BQ9BVS5 477 aaKnown RBP12.72□□□□□ -0.37
VRK1-204ENST00000555351 SLC39A2Q9NP94 309 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 EXOC1Q9NV70 894 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 DDX43Q9NXZ2 648 aaKnown RBP12.72□□□□□ -0.37
VRK1-204ENST00000555351 OBP2AQ9NY56 170 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 DLGAP2Q9P1A6 1054 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 SLC27A5Q9Y2P5 690 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 PIEZO1Q92508 2521 aa12.72□□□□□ -0.37
VRK1-204ENST00000555351 PTPRJQ12913 1337 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 A0A1B0GVL5 298 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 STK25O00506 426 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 PDXKO00764 312 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 CDC25CP30307 473 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 NBL1P41271 181 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 SYKP43405 635 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 CLDN10P78369 228 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 TEAD2Q15562 447 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 SOWAHAQ2M3V2 549 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 MGAT5BQ3V5L5 792 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 CFAP221Q4G0U5 840 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 ARHGAP15Q53QZ3 475 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 INTS6LQ5JSJ4 861 aaKnown RBP12.71□□□□□ -0.37
VRK1-204ENST00000555351 C1orf228Q6PIY5 440 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 TRAPPC11Q7Z392 1133 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 LRRTM3Q86VH5 581 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 MFSD6LQ8IWD5 586 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 ADGRF2Q8IZF7 708 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 OR5B17Q8NGF7 314 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 ZSCAN18Q8TBC5 510 aaPredicted RBP12.71□□□□□ -0.37
VRK1-204ENST00000555351 NOC3LQ8WTT2 800 aaKnown RBP12.71□□□□□ -0.37
VRK1-204ENST00000555351 ATOH1Q92858 354 aaPredicted RBP12.71□□□□□ -0.37
VRK1-204ENST00000555351 CCDC47Q96A33 483 aaKnown RBP12.71□□□□□ -0.37
VRK1-204ENST00000555351 MSANTD3Q96H12 275 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 CCDC34Q96HJ3 373 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 PKMYT1Q99640 499 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 DMAC2Q9NW81 257 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 MRPS17Q9Y2R5 130 aaKnown RBP12.71□□□□□ -0.37
VRK1-204ENST00000555351 SNX9Q9Y5X1 595 aa12.71□□□□□ -0.37
VRK1-204ENST00000555351 WDFY4Q6ZS81 3184 aa12.71□□□□□ -0.38
VRK1-204ENST00000555351 NUP210Q8TEM1 1887 aaPredicted RBP12.7□□□□□ -0.38
VRK1-204ENST00000555351 A0A1W2PRU2 124 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 MAN2B1O00754 1011 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 NCAM2O15394 837 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 TACC1O75410 805 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 ATF6P18850 670 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 TNNI1P19237 187 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 DDX6P26196 483 aaKnown RBP eCLIP12.7□□□□□ -0.38
VRK1-204ENST00000555351 CASP1P29466 404 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 ATICP31939 592 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 MAGEA11P43364 429 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 CYP2J2P51589 502 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 RPL10AP62906 217 aaKnown RBP12.7□□□□□ -0.38
VRK1-204ENST00000555351 STK4Q13043 487 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 MAPRE1Q15691 268 aaKnown RBP12.7□□□□□ -0.38
VRK1-204ENST00000555351 KMT5BQ4FZB7 885 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 GAREM2Q75VX8 874 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 ALYREFQ86V81 257 aaKnown RBP12.7□□□□□ -0.38
VRK1-204ENST00000555351 NELFCDQ8IXH7 590 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 TTC9BQ8N6N2 239 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 TRMT2BQ96GJ1 504 aaKnown RBP12.7□□□□□ -0.38
VRK1-204ENST00000555351 ZSWIM3Q96MP5 696 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 GCNAQ96QF7 691 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 SEPT5Q99719 369 aaPredicted RBP12.7□□□□□ -0.38
VRK1-204ENST00000555351 PLA2G2FQ9BZM2 168 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 BRD9Q9H8M2 597 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 VRTNQ9H8Y1 702 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms