RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 PHF7Q9BWX1 381 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-217ENST00000555116 CRISPLD1Q9H336 500 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 MMRN2Q9H8L6 949 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 CYP4F11Q9HBI6 524 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 NME7Q9Y5B8 376 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 MTMR11A4FU01 709 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 C19orf67A6NJJ6 358 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 PRRG1O14668 218 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 CCL16O15467 120 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 HCRTO43612 131 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 TACC1O75410 805 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 PIK3CAP42336 1068 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 TNNC1P63316 161 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 ZNF667Q5HYK9 610 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 TAF4BQ92750 862 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 SLC35C1Q96A29 364 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 MMS19Q96T76 1030 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 PKMYT1Q99640 499 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 ACBD6Q9BR61 282 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 SRRTQ9BXP5 876 aaKnown RBP15.23■□□□□ 0.03
SHMT2-217ENST00000555116 METTL14Q9HCE5 456 aaKnown RBP15.23■□□□□ 0.03
SHMT2-217ENST00000555116 NXF1Q9UBU9 619 aaKnown RBP15.23■□□□□ 0.03
SHMT2-217ENST00000555116 INSL5Q9Y5Q6 135 aa15.23■□□□□ 0.03
SHMT2-217ENST00000555116 CUL9Q8IWT3 2517 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 STX10O60499 249 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 LRRN2O75325 713 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 LETM1O95202 739 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-217ENST00000555116 ACAT1P24752 427 aaKnown RBP15.22■□□□□ 0.03
SHMT2-217ENST00000555116 LMO2P25791 158 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 MYL7Q01449 175 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 CCDC40Q4G0X9 1142 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 SLC39A12Q504Y0 691 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 DCAF17Q5H9S7 520 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-217ENST00000555116 INTS6LQ5JSJ4 861 aaKnown RBP15.22■□□□□ 0.03
SHMT2-217ENST00000555116 KRT39Q6A163 491 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 ATAD1Q8NBU5 361 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 SEMA4DQ92854 862 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 PI4K2AQ9BTU6 479 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 TSPY26PQ9H489 355 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 WDR6Q9NNW5 1121 aaKnown RBP15.22■□□□□ 0.03
SHMT2-217ENST00000555116 CD320Q9NPF0 282 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 TMLHEQ9NVH6 421 aa15.22■□□□□ 0.03
SHMT2-217ENST00000555116 MXI1P50539 228 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 MARSP56192 900 aaKnown RBP15.21■□□□□ 0.03
SHMT2-217ENST00000555116 TSPY1Q01534 308 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 DUSP4Q13115 394 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 CBWD6Q4V339 395 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 CBWD3Q5JTY5 395 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 CBWD5Q5RIA9 395 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 TCERG1LQ5VWI1 586 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 SPOPLQ6IQ16 392 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 DCP1BQ8IZD4 617 aaKnown RBP15.21■□□□□ 0.03
SHMT2-217ENST00000555116 TTC9BQ8N6N2 239 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 SDCBP2Q9H190 292 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 SMYD3Q9H7B4 428 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 PIDD1Q9HB75 910 aa15.21■□□□□ 0.03
SHMT2-217ENST00000555116 LOC730098B7Z3J9 87 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 XYLBO75191 536 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 GNA14O95837 355 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 PCSK1P29120 753 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 SMARCB1Q12824 385 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 CCDC142Q17RM4 750 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 APOBEC3GQ9HC16 384 aaKnown RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 HSFX1Q9UBD0 423 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 SLC27A5Q9Y2P5 690 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 COQ4Q9Y3A0 265 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 YIPF1Q9Y548 306 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 GREB1Q4ZG55 1949 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 CLUHO75153 1309 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 VCANP13611 3396 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 BDP1A6H8Y1 2624 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 ATP2C2O75185 946 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 FGFR1OPO95684 399 aaKnown RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 LRG1P02750 347 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 ERCC5P28715 1186 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 GNL1P36915 607 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 ASPAP45381 313 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 RAP1GAPP47736 663 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 CDR1P51861 262 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 CDH8P55286 799 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 NOP14P78316 857 aaKnown RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 FAM171BQ6P995 826 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 GRASPQ7Z6J2 395 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 TRIM59Q8IWR1 403 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 FBXL13Q8NEE6 735 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 C2orf15Q8WU43 125 aaKnown RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 RPGRIP1Q96KN7 1286 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 SYT15Q9BQS2 421 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.2■□□□□ 0.023e-6■■■■■ 44
SHMT2-217ENST00000555116 HCFC1R1Q9NWW0 138 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 DNMT3BQ9UBC3 853 aaKnown RBP15.2■□□□□ 0.02
SHMT2-217ENST00000555116 DACH1Q9UI36 760 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 CDH9Q9ULB4 789 aa15.2■□□□□ 0.02
SHMT2-217ENST00000555116 MYH10P35580 1976 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 DENND4CQ5VZ89 1909 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 MYBPHLA2RUH7 354 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 PDGFRBP09619 1106 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 NTHL1P78549 312 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 TWF1Q12792 350 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 NFE2Q16621 373 aaPredicted RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms