RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 ARMCX3Q9UH62 379 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 FBXL5Q9UKA1 691 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 FAN1Q9Y2M0 1017 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 PRG3Q9Y2Y8 225 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 REXO2Q9Y3B8 237 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 SAR1BQ9Y6B6 198 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 BZW2Q9Y6E2 419 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 SPEGQ15772 3267 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 COL4A2P08572 1712 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 TICRRQ7Z2Z1 1910 aa11.96□□□□□ -0.5
SHMT2-216ENST00000554975 PKD1L2Q7Z442 2459 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 TARSL2A2RTX5 802 aaKnown RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 LRRC53A6NM62 1247 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 SLC30A4O14863 429 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 ZNF623O75123 536 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 ZRANB2O95218 330 aaKnown RBP eCLIP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 POMCP01189 267 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 PNMA6AP0CW24 399 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 NR2F2P24468 414 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 CTTNQ14247 550 aaKnown RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 TARBP2Q15633 366 aaKnown RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 ECM1Q16610 540 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 IFI16Q16666 785 aaKnown RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 SLC44A4Q53GD3 710 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 CC2D1AQ6P1N0 951 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 HS2ST1Q7LGA3 356 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 VPS36Q86VN1 386 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 SFR1Q86XK3 245 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 KSR1Q8IVT5 923 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 TPH2Q8IWU9 490 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 RNF10Q8N5U6 811 aaKnown RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 SCFD1Q8WVM8 642 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 DYDC2Q96IM9 177 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 SHDQ96IW2 340 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 CCDC43Q96MW1 224 aaKnown RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 NACC1Q96RE7 527 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 CEP89Q96ST8 783 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 ARID3AQ99856 593 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 REEP2Q9BRK0 252 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 GCOM2Q9BZD3 368 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 PIDD1Q9HB75 910 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 RXFP1Q9HBX9 757 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 FAM207AQ9NSI2 230 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-216ENST00000554975 AGPAT5Q9NUQ2 364 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 FAM53CQ9NYF3 392 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 RGL1Q9NZL6 768 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 RAB21Q9UL25 225 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 JRKLQ9Y4A0 524 aa11.95□□□□□ -0.5
SHMT2-216ENST00000554975 MYH10P35580 1976 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 PDCD11Q14690 1871 aaKnown RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 CARNS1A5YM72 827 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 SHISA7A6NL88 538 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 RNF225M0QZC1 329 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 TGM5O43548 720 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 GDF9O60383 454 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 GFPT2O94808 682 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 AFPP02771 609 aaKnown RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 ALDH2P05091 517 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 PRLRP16471 622 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 RPL17P18621 184 aaKnown RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 NPEPPSP55786 919 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 CBX1P83916 185 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 ADAM9Q13443 819 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 FZD5Q13467 585 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 MYBPC2Q14324 1141 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 ASIC2Q16515 512 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 XKR9Q5GH70 373 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 ANO5Q75V66 913 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 RRAGAQ7L523 313 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 EPM2AIP1Q7L775 607 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 OTUD6AQ7L8S5 288 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 RSPH1Q8WYR4 309 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 BAP1Q92560 729 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 HPS3Q969F9 1004 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 CEP170P1Q96L14 293 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 TMEM175Q9BSA9 504 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 LSM14BQ9BX40 385 aaKnown RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 NIFKQ9BYG3 293 aaKnown RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 PRKD2Q9BZL6 878 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 ZHX3Q9H4I2 956 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 ZSWIM4Q9H7M6 989 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 RSAD1Q9HA92 442 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 PARVGQ9HBI0 331 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 PRMT8Q9NR22 394 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-216ENST00000554975 RNF14Q9UBS8 474 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 HYOU1Q9Y4L1 999 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 PCDHB2Q9Y5E7 798 aa11.94□□□□□ -0.5
SHMT2-216ENST00000554975 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-216ENST00000554975 TBC1D4O60343 1298 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 STBD1O95210 358 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 GCNT3O95395 438 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 CCDC172P0C7W6 258 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 SPATA31C1P0DKV0 1188 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 MAPTP10636 758 aaKnown RBP11.93□□□□□ -0.5
SHMT2-216ENST00000554975 TDGF1P13385 188 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 KCNA4P22459 653 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 FSHRP23945 695 aa11.93□□□□□ -0.5
SHMT2-216ENST00000554975 YWHABP31946 246 aaKnown RBP11.93□□□□□ -0.5
SHMT2-216ENST00000554975 EIF4A3P38919 411 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms