RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CLSTN3Q9BQT9 956 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 ACBD6Q9BR61 282 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 NAA15Q9BXJ9 866 aaKnown RBP13.07□□□□□ -0.32
SHMT2-209ENST00000553949 TRIM5Q9C035 493 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 GANQ9H2C0 597 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 HMGXB4Q9UGU5 601 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 FHOD1Q9Y613 1164 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 CDY1Q9Y6F8 540 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 PLXNA4Q9HCM2 1894 aa13.07□□□□□ -0.32
SHMT2-209ENST00000553949 ADH1AP07327 375 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 OR4Q2P0C623 313 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 POU3F3P20264 500 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-209ENST00000553949 OR1D2P34982 312 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 NDUFV1P49821 464 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 ARPP19P56211 112 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 POLR2FP61218 127 aaKnown RBP13.06□□□□□ -0.32
SHMT2-209ENST00000553949 PSMC1P62191 440 aaKnown RBP13.06□□□□□ -0.32
SHMT2-209ENST00000553949 TSPY1Q01534 308 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 ORC1Q13415 861 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 ARHGAP44Q17R89 818 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 INTS6LQ5JSJ4 861 aaKnown RBP13.06□□□□□ -0.32
SHMT2-209ENST00000553949 ADGRD2Q7Z7M1 963 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 DEFB123Q8N688 67 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 WHAMMQ8TF30 809 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 TWNKQ96RR1 684 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 TMEM209Q96SK2 561 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 SYT15Q9BQS2 421 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 NT5C1AQ9BXI3 368 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 ELOVL4Q9GZR5 314 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 ZCWPW1Q9H0M4 648 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 DPEP3Q9H4B8 488 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 NSUN3Q9H649 340 aaKnown RBP13.06□□□□□ -0.32
SHMT2-209ENST00000553949 CDH9Q9ULB4 789 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 DAAM1Q9Y4D1 1078 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 PCDHB4Q9Y5E5 795 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 MTCH2Q9Y6C9 303 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 SZT2Q5T011 3432 aa13.06□□□□□ -0.32
SHMT2-209ENST00000553949 FSD2A1L4K1 749 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 GOLGA6L3A6NEY3 463 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 PER2O15055 1255 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 CLASP2O75122 1294 aaKnown RBP13.05□□□□□ -0.32
SHMT2-209ENST00000553949 ATP2C2O75185 946 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 KRT5P13647 590 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 CPB1P15086 417 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 TRIM21P19474 475 aaKnown RBP13.05□□□□□ -0.32
SHMT2-209ENST00000553949 IGFBP4P22692 258 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 KLRC2P26717 231 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 RAD23BP54727 409 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 ROR1Q01973 937 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 RAPGEF1Q13905 1077 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 RAB33AQ14088 237 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 ZNF394Q53GI3 561 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 TMEM270Q6UE05 265 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 ACOT1Q86TX2 421 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 LRRTM3Q86VH5 581 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 GLYCTKQ8IVS8 523 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 B3GALNT2Q8NCR0 500 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 SHC3Q92529 594 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 PPP2R3CQ969Q6 453 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 TNIP3Q96KP6 325 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 GUCD1Q96NT3 240 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 GAS2L1Q99501 681 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-209ENST00000553949 CDX2Q99626 313 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-209ENST00000553949 PKMYT1Q99640 499 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 STK33Q9BYT3 514 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 GPR88Q9GZN0 384 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 TLE6Q9H808 572 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 CRTAC1Q9NQ79 661 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 CNTN6Q9UQ52 1028 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 ITIH6Q6UXX5 1313 aa13.05□□□□□ -0.32
SHMT2-209ENST00000553949 COL4A4P53420 1690 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-209ENST00000553949 VWA8A3KMH1 1905 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 WDR27A2RRH5 827 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 MYBPHLA2RUH7 354 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 PTPN1P18031 435 aaKnown RBP13.04□□□□□ -0.32
SHMT2-209ENST00000553949 NRIP1P48552 1158 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 ZNF75DP51815 510 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 ZNF132P52740 706 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 GPR17Q13304 367 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 DRAP1Q14919 205 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-209ENST00000553949 DUSP6Q16828 381 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 CCDC142Q17RM4 750 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 SLC39A12Q504Y0 691 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 TCEAL5Q5H9L2 206 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 FIGNQ5HY92 759 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 SMYD5Q6GMV2 418 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 FAM171BQ6P995 826 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 RBM23Q86U06 439 aaKnown RBP13.04□□□□□ -0.32
SHMT2-209ENST00000553949 PPFIBP1Q86W92 1011 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 PALB2Q86YC2 1186 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 VSTM4Q8IW00 320 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 DCP1BQ8IZD4 617 aaKnown RBP13.04□□□□□ -0.32
SHMT2-209ENST00000553949 CRYBG2Q8N1P7 616 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 SLC4A11Q8NBS3 891 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 RBBP8NLQ8NC74 664 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-209ENST00000553949 MYCBPAPQ8TBZ2 947 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 MYLIPQ8WY64 445 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 TMEM176AQ96HP8 235 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 NUP58Q9BVL2 599 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 DNAI2Q9GZS0 605 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms