RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 FBXO38Q6PIJ6 1188 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 DOK3Q7L591 496 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 GPRIN1Q7Z2K8 1008 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 GGNQ86UU5 652 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 CLASRPQ8N2M8 674 aaKnown RBP5.96□□□□□ -1.46
SCFD1-209ENST00000553280 GLIS1Q8NBF1 620 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 CCDC150Q8NCX0 1101 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 SHCBP1Q8NEM2 672 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 IL17REQ8NFR9 667 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 ZFP28Q8NHY6 868 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 SPSB4Q96A44 273 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 LRRC46Q96FV0 321 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 SPATA5L1Q9BVQ7 753 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 SORBS1Q9BX66 1292 aaKnown RBP5.96□□□□□ -1.46
SCFD1-209ENST00000553280 EPC1Q9H2F5 836 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 XPNPEP3Q9NQH7 507 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 TERF2IPQ9NYB0 399 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 RGL1Q9NZL6 768 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 LRFN1Q9P244 771 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 XPR1Q9UBH6 696 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 CAPN11Q9UMQ6 739 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 JAG2Q9Y219 1238 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 LRRFIP2Q9Y608 721 aaKnown RBP5.96□□□□□ -1.46
SCFD1-209ENST00000553280 ZNF536O15090 1300 aa5.96□□□□□ -1.46
SCFD1-209ENST00000553280 A0A1W2PRX2 142 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 PRRT4C9JH25 899 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 PODXLO00592 558 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 B4GALT4O60513 344 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 RASSF9O75901 435 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 PLATP00750 562 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 ITGB3P05106 788 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 SRGNP10124 158 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 FDXRP22570 491 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 PTTG1IPP53801 180 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 RAC3P60763 192 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 POSTNQ15063 836 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 FAM214AQ32MH5 1076 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 FKBP15Q5T1M5 1219 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 ATXN7L2Q5T6C5 722 aaPredicted RBP5.95□□□□□ -1.46
SCFD1-209ENST00000553280 FAM160B1Q5W0V3 765 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 FAM111BQ6SJ93 734 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 GPR135Q8IZ08 494 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 FITM2Q8N6M3 262 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 SLC17A8Q8NDX2 589 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 TMIEQ8NEW7 156 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 FAM71BQ8TC56 605 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 SNX27Q96L92 541 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 ZNF512Q96ME7 567 aaPredicted RBP5.95□□□□□ -1.46
SCFD1-209ENST00000553280 RBM15Q96T37 977 aaKnown RBP eCLIP5.95□□□□□ -1.46
SCFD1-209ENST00000553280 SENP7Q9BQF6 1050 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 MS4A7Q9GZW8 240 aaPredicted RBP5.95□□□□□ -1.46
SCFD1-209ENST00000553280 ITM2CQ9NQX7 267 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 IGSF9Q9P2J2 1179 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 MID2Q9UJV3 735 aa5.95□□□□□ -1.46
SCFD1-209ENST00000553280 A0A087WZ62 844 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 CDHR4A6H8M9 788 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 INMTO95050 263 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 CNOT4O95628 575 aaKnown RBP5.94□□□□□ -1.46
SCFD1-209ENST00000553280 CYP2C9P11712 490 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 XRCC6P12956 609 aaKnown RBP eCLIP5.94□□□□□ -1.46
SCFD1-209ENST00000553280 WNT3P56703 355 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 SLC29A2Q14542 456 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 JAKMIP3Q5VZ66 844 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 JMJD6Q6NYC1 403 aaPredicted RBP5.94□□□□□ -1.46
SCFD1-209ENST00000553280 USP17L6PQ6QN14 398 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 CLEC4GQ6UXB4 293 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 DBX2Q6ZNG2 339 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 RFX8Q6ZV50 586 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 PPP1R32Q7Z5V6 425 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 FAM83AQ86UY5 434 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 XYLT1Q86Y38 959 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 GALNT15Q8N3T1 639 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 DNERQ8NFT8 737 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 TBC1D15Q8TC07 691 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 TFAP2CQ92754 450 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 EID2BQ96D98 161 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 LOXL4Q96JB6 756 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 UBXN10Q96LJ8 280 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 KLHL32Q96NJ5 620 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 LSM14BQ9BX40 385 aaKnown RBP5.94□□□□□ -1.46
SCFD1-209ENST00000553280 DHX36Q9H2U1 1008 aaKnown RBP5.94□□□□□ -1.46
SCFD1-209ENST00000553280 NELFAQ9H3P2 528 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 GJD2Q9UKL4 321 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 HDAC9Q9UKV0 1011 aa5.94□□□□□ -1.46
SCFD1-209ENST00000553280 LOC102723971A0A1B0GUV8 181 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 A0A1B0GVC2 190 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 AQP12BA6NM10 295 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 E9PLN8 166 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 M0QYG6 137 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 B4GALT3O60512 393 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 AGR2O95994 175 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 ITGA5P08648 1049 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 INSRRP14616 1297 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 IDEP14735 1019 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 DDIT3P35638 169 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 VIPR2P41587 438 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 NPY5RQ15761 445 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 CSRP2Q16527 193 aa5.93□□□□□ -1.46
SCFD1-209ENST00000553280 ARL6IP4Q66PJ3 421 aaKnown RBP5.93□□□□□ -1.46
SCFD1-209ENST00000553280 TANGO2Q6ICL3 276 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms