RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 ACCSQ96QU6 501 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 TUBGCP2Q9BSJ2 902 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 RPP25Q9BUL9 199 aaKnown RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 VPS16Q9H269 839 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 NRDE2Q9H7Z3 1164 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 LTB4R2Q9NPC1 389 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 TBC1D7Q9P0N9 293 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 PIN4Q9Y237 131 aaKnown RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 COL4A3Q01955 1670 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 MYO10Q9HD67 2058 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 TRIM49BA6NDI0 452 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 LGALS16A8MUM7 142 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 AKR1B15C9JRZ8 316 aaPredicted RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 ANHXE9PGG2 379 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 K7ENM7 598 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 SLC16A3O15427 465 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 TBC1D4O60343 1298 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 DARSP14868 501 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 EIF4BP23588 611 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 FSHRP23945 695 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 TARSP26639 723 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 PHKA2P46019 1235 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 PRKCEQ02156 737 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 ADAM9Q13443 819 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 NFIL3Q16649 462 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 HSP90AA4PQ58FG1 418 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 LAIR1Q6GTX8 287 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 PARM1Q6UWI2 310 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 PRR23CQ6ZRP0 262 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 USP37Q86T82 979 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 PALB2Q86YC2 1186 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF280BQ86YH2 543 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 CNGA4Q8IV77 575 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 LRRC8AQ8IWT6 810 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 NELFCDQ8IXH7 590 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 LINC00528Q8N1L1 170 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 URGCPQ8TCY9 931 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 SCFD1Q8WVM8 642 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 TCP11Q8WWU5 503 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 SLC7A3Q8WY07 619 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 HPS3Q969F9 1004 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 COL26A1Q96A83 441 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 NAP1L5Q96NT1 182 aaPredicted RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 DUSP9Q99956 384 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 KXD1Q9BQD3 176 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 NAA15Q9BXJ9 866 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 HSD3B7Q9H2F3 369 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 ADAMTS10Q9H324 1103 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 ST6GALNAC4Q9H4F1 302 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 PRMT8Q9NR22 394 aaPredicted RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 SEMA4GQ9NTN9 838 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNHIT6Q9NWK9 470 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 TAB2Q9NYJ8 693 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 TRAF3IP3Q9Y228 551 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 FRMD4BQ9Y2L6 1034 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 MAFBQ9Y5Q3 323 aaPredicted RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 DOCK5Q9H7D0 1870 aa7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 DSPP15924 2871 aaKnown RBP7.68□□□□□ -1.18
DEPDC4-208ENST00000549341 SMG1Q96Q15 3661 aaKnown RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 FNDC1Q4ZHG4 1894 aaPredicted RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 CCDC169A6NNP5 214 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 LILRB5O75023 590 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 PRPF6O94906 941 aaKnown RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 KRT13P13646 458 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 NR2F2P24468 414 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 TMOD1P28289 359 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 PMLP29590 882 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 PSMC2P35998 433 aaKnown RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 GLUD2P49448 558 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 GPC3P51654 580 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 PMS1P54277 932 aaKnown RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 NTHL1P78549 312 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 PRKCQQ04759 706 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 MTAPQ13126 283 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 MTERF2Q49AM1 385 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 AASDHQ4L235 1098 aaPredicted RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 VWA3BQ502W6 1294 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 SLC44A4Q53GD3 710 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 ZBTB41Q5SVQ8 909 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 N4BP2L1Q5TBK1 243 aaPredicted RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 EFCAB12Q6NXP0 572 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 MAEAQ7L5Y9 396 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 EPM2AIP1Q7L775 607 aaPredicted RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF720Q7Z2F6 126 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 SVOPQ8N4V2 548 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 SPIRE2Q8WWL2 714 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 B3GALT6Q96L58 329 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 FAM193BQ96PV7 902 aaPredicted RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 MED15Q96RN5 788 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 RPS6KC1Q96S38 1066 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 MKNK1Q9BUB5 465 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 HERC2P3Q9BVR0 1158 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 NIFKQ9BYG3 293 aaKnown RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 KCTD10Q9H3F6 313 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 KMT5AQ9NQR1 393 aa7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 WRAP73Q9P2S5 460 aaPredicted RBP7.67□□□□□ -1.18
DEPDC4-208ENST00000549341 ARMCX3Q9UH62 379 aaPredicted RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms