RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	LPIN3	Q9BQK8	851 aa		24.9	■■□□□ 1.58
SMARCD1-204	ENST00000547637	MRPL44	Q9H9J2	332 aa	Known RBP	24.9	■■□□□ 1.58
SMARCD1-204	ENST00000547637	GTSE1	Q9NYZ3	720 aa		24.9	■■□□□ 1.58
SMARCD1-204	ENST00000547637	PCDHB5	Q9Y5E4	795 aa		24.9	■■□□□ 1.58
SMARCD1-204	ENST00000547637	TCHH	Q07283	1943 aa		24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	FOXD2	O60548	495 aa	Predicted RBP	24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	HAPLN1	P10915	354 aa	Predicted RBP	24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	DDX6	P26196	483 aa	Known RBP eCLIP	24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	SOX9	P48436	509 aa		24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	ATXN1	P54253	815 aa	Known RBP	24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	LPAL2	Q16609	132 aa		24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	ITPRIPL2	Q3MIP1	535 aa		24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	TTC8	Q8TAM2	541 aa		24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	MKNK1	Q9BUB5	465 aa		24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	ABI2	Q9NYB9	513 aa	Predicted RBP	24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	R3HCC1	Q9Y3T6	440 aa	Known RBP	24.89	■■□□□ 1.58
SMARCD1-204	ENST00000547637	SCN1A	P35498	2009 aa		24.89	■■□□□ 1.57
SMARCD1-204	ENST00000547637	COL4A2	P08572	1712 aa		24.89	■■□□□ 1.57
SMARCD1-204	ENST00000547637	NCAN	O14594	1321 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	NUP210	Q8TEM1	1887 aa	Predicted RBP	24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	SOBP	A7XYQ1	873 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CENPB	P07199	599 aa	Predicted RBP	24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GAP43	P17677	238 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CYP4F8	P98187	520 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	SPEM2	Q0P670	501 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	BFSP1	Q12934	665 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	PON2	Q15165	354 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	NFE2	Q16621	373 aa	Predicted RBP	24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	RRAGB	Q5VZM2	374 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	WSCD1	Q658N2	575 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	SV2B	Q7L1I2	683 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GIPC2	Q8TF65	315 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ZFYVE19	Q96K21	471 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ACCS	Q96QU6	501 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	RBM12	Q9NTZ6	932 aa	Known RBP	24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	PCDHB13	Q9Y5F0	798 aa		24.88	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ANK1	P16157	1881 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CHURC1-FNTB	B4DL54	471 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	FNTB	P49356	437 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GRIN1	Q05586	938 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CC2D1A	Q6P1N0	951 aa	Predicted RBP	24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CEP68	Q76N32	757 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	SFR1	Q86XK3	245 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CMTM8	Q8IZV2	173 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	LRRC15	Q8TF66	581 aa		24.87	■■□□□ 1.57
SMARCD1-204	ENST00000547637	WDR87	Q6ZQQ6	2873 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	VPS37C	A5D8V6	355 aa	Predicted RBP	24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	HUS1	O60921	280 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ATG13	O75143	517 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CSH1	P0DML2	217 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CSH2	P0DML3	217 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ATF6	P18850	670 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	TFAM	Q00059	246 aa	Known RBP	24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GRSF1	Q12849	480 aa	Known RBP eCLIP	24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GAS6	Q14393	721 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	SYCP3	Q8IZU3	236 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	MRPS31	Q92665	395 aa	Known RBP	24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	SLC46A2	Q9BY10	475 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	KIF9	Q9HAQ2	790 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GKN1	Q9NS71	199 aa		24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	UXT	Q9UBK9	157 aa	Predicted RBP	24.86	■■□□□ 1.57
SMARCD1-204	ENST00000547637	PRPF40A	O75400	957 aa	Known RBP	24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CD2BP2	O95400	341 aa	Known RBP	24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	HOXA6	P31267	233 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	RPL10A	P62906	217 aa	Known RBP	24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	MYL7	Q01449	175 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	TXNDC11	Q6PKC3	985 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	TMEM86A	Q8N2M4	240 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	NETO1	Q8TDF5	533 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	EPSTI1	Q96J88	318 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	LRRC3B	Q96PB8	259 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	FAM213A	Q9BRX8	229 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	IL21	Q9HBE4	155 aa		24.85	■■□□□ 1.57
SMARCD1-204	ENST00000547637	TISP43	B9A030	160 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GCNT3	O95395	438 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	PRAMEF12	O95522	483 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	TGM1	P22735	817 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ALCAM	Q13740	583 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CCIN	Q13939	588 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	L1TD1	Q5T7N2	865 aa	Known RBP	24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	HEATR6	Q6AI08	1181 aa	Known RBP	24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CRELD2	Q6UXH1	353 aa	Predicted RBP	24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	CCDC73	Q6ZRK6	1079 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637		Q6ZS52	159 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	LRRTM3	Q86VH5	581 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	MAB21L3	Q8N8X9	362 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ACBD6	Q9BR61	282 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	TDP1	Q9NUW8	608 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	MAGED2	Q9UNF1	606 aa	Predicted RBP	24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	AGAP1	Q9UPQ3	857 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	SRPRB	Q9Y5M8	271 aa	Known RBP	24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	RALGAPA1	Q6GYQ0	2036 aa		24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637	ZNF638	Q14966	1978 aa	Known RBP	24.84	■■□□□ 1.57
SMARCD1-204	ENST00000547637		K7ESF4	209 aa		24.83	■■□□□ 1.57
SMARCD1-204	ENST00000547637	HR	O43593	1189 aa		24.83	■■□□□ 1.57
SMARCD1-204	ENST00000547637	IDE	P14735	1019 aa		24.83	■■□□□ 1.57
SMARCD1-204	ENST00000547637	GART	P22102	1010 aa		24.83	■■□□□ 1.57
SMARCD1-204	ENST00000547637	TNK2	Q07912	1038 aa		24.83	■■□□□ 1.57
SMARCD1-204	ENST00000547637	RUNX3	Q13761	415 aa		24.83	■■□□□ 1.57

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms