RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 GKN1Q9NS71 199 aa19.31■□□□□ 0.68
CLSTN3-214ENST00000542663 CCL26Q9Y258 94 aa19.31■□□□□ 0.68
CLSTN3-214ENST00000542663 ABCA7Q8IZY2 2146 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 ANO9A1A5B4 782 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 PIRO00625 290 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 OGTO15294 1046 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 CDC25CP30307 473 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 LIG4P49917 911 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 MGAT5BQ3V5L5 792 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 TRIM68Q6AZZ1 485 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 SLC39A4Q6P5W5 647 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 CMTM8Q8IZV2 173 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 RIN3Q8TB24 985 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 ZC3H10Q96K80 434 aaKnown RBP19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 TSPAN18Q96SJ8 248 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 RPF1Q9H9Y2 349 aaKnown RBP19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 THG1LQ9NWX6 298 aaKnown RBP19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 KCND2Q9NZV8 630 aa19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 TNRC6BQ9UPQ9 1833 aaKnown RBP19.3■□□□□ 0.68
CLSTN3-214ENST00000542663 TRDMT1O14717 391 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 HNRNPDLO14979 420 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 PIGRP01833 764 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 NFICP08651 508 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 PLA2G4BP0C869 781 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 CCDC192P0DO97 292 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 TUFMP49411 452 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 RUNX3Q13761 415 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 KYAT1Q16773 422 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 LRRTM3Q86VH5 581 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 FAM184AQ8NB25 1140 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 GIPC2Q8TF65 315 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 EBF3Q9H4W6 596 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 FBRSL1Q9HCM7 1045 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 LARSQ9P2J5 1176 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 CPSF3Q9UKF6 684 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 TBX20Q9UMR3 447 aa19.29■□□□□ 0.68
CLSTN3-214ENST00000542663 A0A0B4J269 797 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 H0YCG3 227 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 AKAP3O75969 853 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 SEC24BO95487 1268 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 EGFP01133 1207 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 NMT1P30419 496 aaKnown RBP19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 MPLP40238 635 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 ATP2C1P98194 919 aaPredicted RBP19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 VEPH1Q14D04 833 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 NAIF1Q69YI7 327 aaPredicted RBP19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 LRRC15Q8TF66 581 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 USP13Q92995 863 aaPredicted RBP19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 FAM212AQ96EL1 285 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 REEP2Q9BRK0 252 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 LSM14BQ9BX40 385 aaKnown RBP19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 RALYQ9UKM9 306 aaKnown RBP19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 SLC8A2Q9UPR5 921 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 PCDHGA5Q9Y5G8 931 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 CEP295Q9C0D2 2601 aa19.28■□□□□ 0.68
CLSTN3-214ENST00000542663 WDFY3Q8IZQ1 3526 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 ATG13O75143 517 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 RNF40O75150 1001 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 KCNK5O95279 499 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 F11P03951 625 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 HAPLN1P10915 354 aaPredicted RBP19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 ARSAP15289 507 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 HMGA1P17096 107 aaKnown RBP19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 PAX3P23760 479 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 NLRP12P59046 1061 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 GRSF1Q12849 480 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 PTPAQ15257 358 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 PLK5Q496M5 336 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 TMEM119Q4V9L6 283 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 TCEAL6Q6IPX3 200 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 CAMKK1Q8N5S9 505 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 KCTD17Q8N5Z5 321 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 MAB21L3Q8N8X9 362 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 TCEAL3Q969E4 200 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 GCNAQ96QF7 691 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 MSTO1Q9BUK6 570 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 ODF2LQ9ULJ1 636 aa19.27■□□□□ 0.68
CLSTN3-214ENST00000542663 CEP192Q8TEP8 1941 aa19.27■□□□□ 0.67
CLSTN3-214ENST00000542663 ASPMQ8IZT6 3477 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 TMEM132DQ14C87 1099 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 CD302Q8IX05 232 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 STKLD1Q8NE28 680 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 SPPL2BQ8TCT7 592 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 C2orf15Q8WU43 125 aaKnown RBP19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 EZH1Q92800 747 aaPredicted RBP19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 HHIPQ96QV1 700 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 DUSP15Q9H1R2 295 aaPredicted RBP19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 ZMYM5Q9UJ78 669 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 DSEQ9UL01 958 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 DERAQ9Y315 318 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 ZZEF1O43149 2961 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 SPEGQ15772 3267 aa19.26■□□□□ 0.67
CLSTN3-214ENST00000542663 VWA3AA6NCI4 1184 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 K7ENM7 598 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 CYB561D2O14569 222 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 AVPR1AP37288 418 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 GALK1P51570 392 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 ZNF131P52739 623 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 TAF12Q16514 161 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 WSCD1Q658N2 575 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms