RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 STK4Q13043 487 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 GAS6Q14393 721 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 NOLC1Q14978 699 aaKnown RBP eCLIP9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SF3A2Q15428 464 aaKnown RBP9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 TEAD2Q15562 447 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 EEF1DP3Q658K8 133 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SLFN12LQ6IEE8 588 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 ZNF687Q8N1G0 1237 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 C3orf58Q8NDZ4 430 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 ZSCAN18Q8TBC5 510 aaPredicted RBP9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 DEPDC1BQ8WUY9 529 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SCFD1Q8WVM8 642 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SMARCD2Q92925 531 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 HPS3Q969F9 1004 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SMARCE1Q969G3 411 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 BICD1Q96G01 975 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 CDT1Q9H211 546 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SLC39A2Q9NP94 309 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 AVENQ9NQS1 362 aaPredicted RBP9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 PCDHA5Q9Y5H7 936 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 INSL5Q9Y5Q6 135 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 WDR87Q6ZQQ6 2873 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 CITO14578 2027 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 GPR179Q6PRD1 2367 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 A0A0B4J269 797 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 TMEM189-UBE2V1I3L0A0 370 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 FOXD2O60548 495 aaPredicted RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 PRPF6O94906 941 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 KIF20AO95235 890 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 SEC24AO95486 1093 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 MBD3O95983 291 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 CPB1P15086 417 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 ATF2P15336 505 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 GARTP22102 1010 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 HOXC13P31276 330 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 GRM5P41594 1212 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 YARSP54577 528 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 POU5F1Q01860 360 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 KCNA1Q09470 495 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 COL9A2Q14055 689 aaPredicted RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 KYAT1Q16773 422 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 UPP1Q16831 310 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 ZNF568Q3ZCX4 644 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 CTXN3Q4LDR2 81 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 COBLL1Q53SF7 1204 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 SLC39A4Q6P5W5 647 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 CD300LGQ6UXG3 332 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 MAMSTRQ6ZN01 415 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 Q6ZS52 159 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 SPEM1Q8N4L4 309 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 KIAA0895Q8NCT3 520 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 GLIS3Q8NEA6 775 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 GPT2Q8TD30 523 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 ZBTB45Q96K62 511 aaPredicted RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 UROC1Q96N76 676 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 PPP1R10Q96QC0 940 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 TCHPQ9BT92 498 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 CLSTN2Q9H4D0 955 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 ASAH2Q9NR71 780 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 CGNQ9P2M7 1197 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 NUB1Q9Y5A7 615 aa9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 MAP1BP46821 2468 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-212ENST00000541770 NCANO14594 1321 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 ANKRD63C9JTQ0 380 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 H7C4K7 107 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 PODXLO00592 558 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 KIAA0391O15091 583 aaKnown RBP9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 OGTO15294 1046 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 FAM189A1O60320 539 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 ABLIM3O94929 683 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 CCDC192P0DO97 292 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 PTMSP20962 102 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 PMLP29590 882 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 HOXD13P35453 343 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 PXNP49023 591 aaPredicted RBP9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 SOX4Q06945 474 aaPredicted RBP9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 PON2Q15165 354 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 KNOP1Q1ED39 458 aaKnown RBP9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 ZNF658Q5TYW1 1059 aaPredicted RBP9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 SLC8B1Q6J4K2 584 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 MFSD6LQ8IWD5 586 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 TCEAL8Q8IYN2 117 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 SYCP3Q8IZU3 236 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 GUF1Q8N442 669 aaKnown RBP9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 TMEM174Q8WUU8 243 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 CCDC94Q9BW85 323 aaPredicted RBP9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 HAPLN2Q9GZV7 340 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 SMOC1Q9H4F8 434 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 TRPV5Q9NQA5 729 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 RXFP3Q9NSD7 469 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 CEP72Q9P209 647 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 KIAA1468Q9P260 1216 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 ANKFY1Q9P2R3 1169 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 FBXL5Q9UKA1 691 aa9.4□□□□□ -0.9
CLSTN3-212ENST00000541770 NUP210Q8TEM1 1887 aaPredicted RBP9.4□□□□□ -0.91
CLSTN3-212ENST00000541770 SPTBN2O15020 2390 aa9.39□□□□□ -0.91
CLSTN3-212ENST00000541770 EML5Q05BV3 1969 aa9.39□□□□□ -0.91
CLSTN3-212ENST00000541770 SMIM28A0A1B0GU29 152 aa9.39□□□□□ -0.91
CLSTN3-212ENST00000541770 A0A1W2PRU2 124 aa9.39□□□□□ -0.91
CLSTN3-212ENST00000541770 SPECC1L-ADORA2AF8WAN1 911 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms