RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CALB1P05937 261 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 RFC1P35251 1148 aaPredicted RBP15.38■□□□□ 0.05
CLIP1-216ENST00000541410 PTGIRP43119 386 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 AARSP49588 968 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLIP1-216ENST00000541410 FLT3LGP49771 235 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 DCAF4L1Q3SXM0 396 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 KAZNQ674X7 775 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 JOSD2Q8TAC2 188 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 SNX27Q96L92 541 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 MRPL45Q9BRJ2 306 aaKnown RBP15.38■□□□□ 0.05
CLIP1-216ENST00000541410 SYNCQ9H7C4 482 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 ITGA11Q9UKX5 1188 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 R3HDM2Q9Y2K5 976 aaKnown RBP15.38■□□□□ 0.05
CLIP1-216ENST00000541410 TLL2Q9Y6L7 1015 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 TCRBV5S1A1TA0A578 114 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 ERBB2P04626 1255 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 CTSHP09668 335 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 AKR1A1P14550 325 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 SLC1A1P43005 524 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 YARSP54577 528 aaKnown RBP15.38■□□□□ 0.05
CLIP1-216ENST00000541410 CUL1Q13616 776 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 SGO2Q562F6 1265 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 FAM47CQ5HY64 1035 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 OR2W6PQ8NHA6 318 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 FAM71BQ8TC56 605 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 PIK3R5Q8WYR1 880 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 ERP44Q9BS26 406 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 FAM49BQ9NUQ9 324 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 CACNG4Q9UBN1 327 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 HSF2BPO75031 334 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 KRT10P13645 584 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 CYP3A5P20815 502 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 ATICP31939 592 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 COILP38432 576 aaPredicted RBP15.37■□□□□ 0.05
CLIP1-216ENST00000541410 PLTPP55058 493 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 PSMC1P62191 440 aaKnown RBP15.37■□□□□ 0.05
CLIP1-216ENST00000541410 PPARDQ03181 441 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 ADCY2Q08462 1091 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 TRIP13Q15645 432 aaPredicted RBP15.37■□□□□ 0.05
CLIP1-216ENST00000541410 RHOT1Q8IXI2 618 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 WNT8BQ93098 351 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 FAM204AQ9H8W3 233 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 MTUS1Q9ULD2 1270 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.37■□□□□ 0.05
CLIP1-216ENST00000541410 NME7Q9Y5B8 376 aa15.37■□□□□ 0.05
CLIP1-216ENST00000541410 BHMG1C9JSJ3 638 aaPredicted RBP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 CHRNA3P32297 505 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 INHBEP58166 350 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 SREBF2Q12772 1141 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 KYAT1Q16773 422 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 SMTNL2Q2TAL5 461 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 CFAP58Q5T655 872 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 KCTD16Q68DU8 428 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 DUPD1Q68J44 220 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 ACOT1Q86TX2 421 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 ARL8AQ96BM9 186 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 RUFY1Q96T51 708 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 MED4Q9NPJ6 270 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 METTL5Q9NRN9 209 aaKnown RBP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 IP6K2Q9UHH9 426 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 MEIS3P2A8K0S8 358 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 TULP2O00295 520 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 MED7O43513 233 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 P4HA1P13674 534 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 CDH5P33151 784 aaPredicted RBP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 RPL21P46778 160 aaKnown RBP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 RGS7P49802 495 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 PRKCZQ05513 592 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 PDE4CQ08493 712 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 ZNF771Q7L3S4 317 aaPredicted RBP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 ARRDC4Q8NCT1 418 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 UBLCP1Q8WVY7 318 aaPredicted RBP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 RAB17Q9H0T7 212 aa15.36■□□□□ 0.05
CLIP1-216ENST00000541410 BARX2Q9UMQ3 279 aaPredicted RBP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.36■□□□□ 0.05
CLIP1-216ENST00000541410 FSCN2O14926 492 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 CA12O43570 354 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 AOC2O75106 756 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 GRAP2O75791 330 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PAEPP09466 180 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 KRT3P12035 628 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 ATF7P17544 494 aaPredicted RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 IGFBP6P24592 240 aaPredicted RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 HSD17B3P37058 310 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 VPS41P49754 854 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 MYO1EQ12965 1108 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 NFX1Q12986 1120 aaKnown RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 UAP1Q16222 522 aaPredicted RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 NBPF20Q3BBV1 942 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 GLIPR1L2Q4G1C9 344 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 DNAJC21Q5F1R6 531 aaKnown RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 KCNT1Q5JUK3 1230 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 ZNF618Q5T7W0 954 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 TWF2Q6IBS0 349 aaKnown RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PRUNE1Q86TP1 453 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 C3orf20Q8ND61 904 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 FBXO25Q8TCJ0 367 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 PIWIL1Q96J94 861 aaKnown RBP15.35■□□□□ 0.05
CLIP1-216ENST00000541410 OSBPL7Q9BZF2 842 aa15.35■□□□□ 0.05
CLIP1-216ENST00000541410 ZNF518BQ9C0D4 1074 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms