RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 LPIN3Q9BQK8 851 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 C17orf80Q9BSJ5 609 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 PBX4Q9BYU1 374 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 ELOVL4Q9GZR5 314 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 NKX2-4Q9H2Z4 354 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 CYP3A43Q9HB55 503 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 ACP6Q9NPH0 428 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 SPG21Q9NZD8 308 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 IMPACTQ9P2X3 320 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 PCDHA11Q9Y5I1 949 aa9.98□□□□□ -0.81
DDX55-208ENST00000541259 TRIOBPQ9H2D6 2365 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 CHD9Q3L8U1 2897 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 LAMA3Q16787 3333 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 AKR1B15C9JRZ8 316 aaPredicted RBP9.97□□□□□ -0.81
DDX55-208ENST00000541259 GABRDO14764 452 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 CYP26A1O43174 497 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 TACC1O75410 805 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 PDGFRBP09619 1106 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 ODC1P11926 461 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 SKILP12757 684 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 KRT5P13647 590 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 FGFR3P22607 806 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 RFX1P22670 979 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 WARSP23381 471 aaKnown RBP9.97□□□□□ -0.81
DDX55-208ENST00000541259 ACAT1P24752 427 aaKnown RBP9.97□□□□□ -0.81
DDX55-208ENST00000541259 SOX5P35711 763 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 BMPR1AP36894 532 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 GNL1P36915 607 aaPredicted RBP9.97□□□□□ -0.81
DDX55-208ENST00000541259 STAT1P42224 750 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 CDR1P51861 262 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 NDST1P52848 882 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 ARID5AQ03989 594 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 ADGRD1Q6QNK2 874 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 TMEM270Q6UE05 265 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 ENOSF1Q7L5Y1 443 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 DPH6Q7L8W6 267 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 IRF2BP2Q7Z5L9 587 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 CEP57Q86XR8 500 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 FAM71AQ8IYT1 594 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 ADGRF2Q8IZF7 708 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 KLHL23Q8NBE8 558 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 RBBP8NLQ8NC74 664 aaPredicted RBP9.97□□□□□ -0.81
DDX55-208ENST00000541259 OR6B3Q8NGW1 331 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 IQCDQ96DY2 449 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 FAXDC2Q96IV6 333 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 FAM81BQ96LP2 452 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 SPAG5Q96R06 1193 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 PPP1R9BQ96SB3 815 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 RTP3Q9BQQ7 232 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 DPEP3Q9H4B8 488 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 MTUS1Q9ULD2 1270 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 BARX2Q9UMQ3 279 aaPredicted RBP9.97□□□□□ -0.81
DDX55-208ENST00000541259 CNTN6Q9UQ52 1028 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 DAAM1Q9Y4D1 1078 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 PCDHB12Q9Y5F1 795 aa9.97□□□□□ -0.81
DDX55-208ENST00000541259 CHD7Q9P2D1 2997 aa9.96□□□□□ -0.81
DDX55-208ENST00000541259 PLXNA3P51805 1871 aa9.96□□□□□ -0.81
DDX55-208ENST00000541259 MTCL1Q9Y4B5 1905 aaKnown RBP9.96□□□□□ -0.81
DDX55-208ENST00000541259 A8MXQ7 604 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 TRAPPC3O43617 180 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 ATP2C2O75185 946 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 CILPO75339 1184 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 FGF18O76093 207 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 CYP11A1P05108 521 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 TPM1P09493 284 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 TYMPP19971 482 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 PAX3P23760 479 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 CTNNB1P35222 781 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 ZNF132P52740 706 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 RAD23BP54727 409 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 TAP1Q03518 808 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 INCA1Q0VD86 236 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 CCDC173Q0VFZ6 552 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 CCDC142Q17RM4 750 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 RTP2Q5QGT7 225 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 SFMBT2Q5VUG0 894 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 KIAA0319Q5VV43 1072 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 OVOS1Q6IE37 1185 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 WDR59Q6PJI9 974 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 ACOT1Q86TX2 421 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 SLC47A2Q86VL8 602 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 METTL23Q86XA0 190 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 RNF168Q8IYW5 571 aaPredicted RBP9.96□□□□□ -0.82
DDX55-208ENST00000541259 TMEM86AQ8N2M4 240 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 SLC4A11Q8NBS3 891 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 ZNF397Q8NF99 534 aaPredicted RBP9.96□□□□□ -0.82
DDX55-208ENST00000541259 OR8K1Q8NGG5 319 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 JAKMIP2Q96AA8 810 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 TMEM169Q96HH4 297 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 TMEM209Q96SK2 561 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 DNAJC7Q99615 494 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 ZSWIM1Q9BR11 485 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 SNX25Q9H3E2 840 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 CERS4Q9HA82 394 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 ALG13Q9NP73 1137 aaKnown RBP9.96□□□□□ -0.82
DDX55-208ENST00000541259 AAASQ9NRG9 546 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 ABHD10Q9NUJ1 306 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 DDX43Q9NXZ2 648 aaKnown RBP9.96□□□□□ -0.82
DDX55-208ENST00000541259 AIPL1Q9NZN9 384 aa9.96□□□□□ -0.82
DDX55-208ENST00000541259 MYO6Q9UM54 1294 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms