RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 TRPC3Q13507 836 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 MORC3Q14149 939 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 SLC39A12Q504Y0 691 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 INTS6LQ5JSJ4 861 aaKnown RBP14.06□□□□□ -0.16
LTBR-208ENST00000541005 PRSS36Q5K4E3 855 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 LRRTM3Q86VH5 581 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 OSTM1Q86WC4 334 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 FAM186BQ8IYM0 893 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 UBALD2Q8IYN6 164 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 DCP1BQ8IZD4 617 aaKnown RBP14.06□□□□□ -0.16
LTBR-208ENST00000541005 ELMOD1Q8N336 334 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 TTC9BQ8N6N2 239 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 ATAD1Q8NBU5 361 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 SPPL2BQ8TCT7 592 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 SYAP1Q96A49 352 aaPredicted RBP14.06□□□□□ -0.16
LTBR-208ENST00000541005 DNAJC25Q9H1X3 360 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 ABCB6Q9NP58 842 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 DDX43Q9NXZ2 648 aaKnown RBP14.06□□□□□ -0.16
LTBR-208ENST00000541005 CEP72Q9P209 647 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 LIMD1Q9UGP4 676 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 CDH7Q9ULB5 785 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 POLIQ9UNA4 740 aa14.06□□□□□ -0.16
LTBR-208ENST00000541005 PSMA7O14818 248 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 VNN1O95497 513 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 BMP6P22004 513 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 TUFMP49411 452 aaKnown RBP14.05□□□□□ -0.16
LTBR-208ENST00000541005 VAMP7P51809 220 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 MYL6P60660 151 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 MTMR3Q13615 1198 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 NCOA4Q13772 614 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 NFE2Q16621 373 aaPredicted RBP14.05□□□□□ -0.16
LTBR-208ENST00000541005 SLC5A9Q2M3M2 681 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 TMEM31Q5JXX7 168 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 NPAS3Q8IXF0 933 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 ITFG1Q8TB96 612 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 FGF13Q92913 245 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 NXPE3Q969Y0 559 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 DHTKD1Q96HY7 919 aaPredicted RBP14.05□□□□□ -0.16
LTBR-208ENST00000541005 TSG101Q99816 390 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 ASB3Q9Y575 518 aa14.05□□□□□ -0.16
LTBR-208ENST00000541005 CETN3O15182 167 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 SLC16A3O15427 465 aaKnown RBP14.04□□□□□ -0.16
LTBR-208ENST00000541005 PHACTR2O75167 634 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 ASGR2P07307 311 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 HAPLN1P10915 354 aaPredicted RBP14.04□□□□□ -0.16
LTBR-208ENST00000541005 KRT13P13646 458 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 CCNE1P24864 410 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 GTF2H1P32780 548 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 ALDH1A3P47895 512 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 PMS1P54277 932 aaKnown RBP14.04□□□□□ -0.16
LTBR-208ENST00000541005 EPHB3P54753 998 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 TNNC1P63316 161 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 FKBP3Q00688 224 aaKnown RBP14.04□□□□□ -0.16
LTBR-208ENST00000541005 SIGLEC14Q08ET2 396 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 BIRC3Q13489 604 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 STIM1Q13586 685 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 HTR4Q13639 388 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 ZNF699Q32M78 642 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 WDR72Q3MJ13 1102 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 IQCEQ6IPM2 695 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 FAM171BQ6P995 826 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 SV2AQ7L0J3 742 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 TMC8Q8IU68 726 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 TRIML1Q8N9V2 468 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 TAF4BQ92750 862 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 PSMG2Q969U7 264 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 IPO9Q96P70 1041 aaKnown RBP14.04□□□□□ -0.16
LTBR-208ENST00000541005 CORO1BQ9BR76 489 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 LRRC3Q9BY71 257 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 KCNK12Q9HB15 430 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 ASAH2Q9NR71 780 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 TMLHEQ9NVH6 421 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 GDE1Q9NZC3 331 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 CDH9Q9ULB4 789 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 MRPS23Q9Y3D9 190 aaKnown RBP14.04□□□□□ -0.16
LTBR-208ENST00000541005 MUC6Q6W4X9 2439 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 COL4A2P08572 1712 aa14.04□□□□□ -0.16
LTBR-208ENST00000541005 MIA3Q5JRA6 1907 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 F5P12259 2224 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 PRR33A8MZF0 331 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 ZNF197O14709 1029 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 ASS1P00966 412 aaKnown RBP14.03□□□□□ -0.16
LTBR-208ENST00000541005 EPB41P11171 864 aaKnown RBP14.03□□□□□ -0.16
LTBR-208ENST00000541005 CD44P16070 742 aaKnown RBP14.03□□□□□ -0.16
LTBR-208ENST00000541005 ATF6P18850 670 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 ACAT1P24752 427 aaKnown RBP14.03□□□□□ -0.16
LTBR-208ENST00000541005 PPP3CAQ08209 521 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 TDGQ13569 410 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 CFAP221Q4G0U5 840 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 ANKRD40Q6AI12 368 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 TRIM67Q6ZTA4 783 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 PDZD4Q76G19 769 aaPredicted RBP14.03□□□□□ -0.16
LTBR-208ENST00000541005 FUBP3Q96I24 572 aaKnown RBP eCLIP14.03□□□□□ -0.16
LTBR-208ENST00000541005 ZNF512Q96ME7 567 aaPredicted RBP14.03□□□□□ -0.16
LTBR-208ENST00000541005 MMS19Q96T76 1030 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 SYT15Q9BQS2 421 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 MRPL45Q9BRJ2 306 aaKnown RBP14.03□□□□□ -0.16
LTBR-208ENST00000541005 DUSP12Q9UNI6 340 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 SLC27A5Q9Y2P5 690 aa14.03□□□□□ -0.16
LTBR-208ENST00000541005 PCDHB5Q9Y5E4 795 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms