RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 C1QL2Q7Z5L3 287 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 PPP1R32Q7Z5V6 425 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 USP37Q86T82 979 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 PPP1R3BQ86XI6 285 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 FAM109AQ8N4B1 249 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 PRR18Q8N4B5 295 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 TNPO1Q92973 898 aaKnown RBP4.62□□□□□ -1.67
VPS13A-213ENST00000539950 RGMAQ96B86 450 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 FAM136AQ96C01 138 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 ZNF778Q96MU6 729 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 MRPL46Q9H2W6 279 aaKnown RBP4.62□□□□□ -1.67
VPS13A-213ENST00000539950 SERHLQ9NQF3 203 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 EHD3Q9NZN3 535 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 PADI4Q9UM07 663 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.62□□□□□ -1.67
VPS13A-213ENST00000539950 WDR91A4D1P6 747 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 SOAT2O75908 522 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 ARIH2O95376 493 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 AHSGP02765 367 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 HNRNPCP07910 306 aaKnown RBP eCLIP4.61□□□□□ -1.67
VPS13A-213ENST00000539950 JUPP14923 745 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 CD6P30203 668 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 ZNF81P51508 661 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 EIF2B5Q13144 721 aaKnown RBP4.61□□□□□ -1.67
VPS13A-213ENST00000539950 TMEM119Q4V9L6 283 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 ZNF782Q6ZMW2 699 aaPredicted RBP4.61□□□□□ -1.67
VPS13A-213ENST00000539950 SCARB1Q8WTV0 552 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 SMG7Q92540 1137 aaKnown RBP4.61□□□□□ -1.67
VPS13A-213ENST00000539950 WDCPQ9H6R7 721 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 SERTAD4Q9NUC0 356 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 ZDHHC8Q9ULC8 765 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 RAD54BQ9Y620 910 aa4.61□□□□□ -1.67
VPS13A-213ENST00000539950 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 LINC01548A6NM66 108 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 M0QYG6 137 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 PPM1DO15297 605 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 SLC16A6O15403 523 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 FTLP02792 175 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-213ENST00000539950 RECQLP46063 649 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-213ENST00000539950 GCLCP48506 637 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-213ENST00000539950 MAP2K6P52564 334 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 HK3P52790 923 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 THEMIS2Q5TEJ8 643 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 USP45Q70EL2 814 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 FAM46DQ8NEK8 389 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 SEMA6DQ8NFY4 1073 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 KLHDC4Q8TBB5 520 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 C1QTNF7Q9BXJ2 289 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 SIK2Q9H0K1 926 aa4.6□□□□□ -1.67
VPS13A-213ENST00000539950 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-213ENST00000539950 ZNF70Q9UC06 446 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-213ENST00000539950 FEZ2Q9UHY8 353 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-213ENST00000539950 TARM1B6A8C7 271 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 SNUPNO95149 360 aaKnown RBP4.59□□□□□ -1.67
VPS13A-213ENST00000539950 TYRP14679 529 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 ZNF134P52741 427 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 BMPR2Q13873 1038 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 PLAC9Q5JTB6 97 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 EPHA10Q5JZY3 1008 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 TMEM108Q6UXF1 575 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 ZNF551Q7Z340 670 aaPredicted RBP4.59□□□□□ -1.67
VPS13A-213ENST00000539950 CATIPQ7Z7H3 387 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 CPA6Q8N4T0 437 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.59□□□□□ -1.67
VPS13A-213ENST00000539950 ARHGEF3Q9NR81 526 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 PCDHA1Q9Y5I3 950 aa4.59□□□□□ -1.67
VPS13A-213ENST00000539950 DCLK1O15075 740 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 DTNBO60941 627 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 GNAI2P04899 355 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 POU2F2P09086 479 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 PIM1P11309 404 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-213ENST00000539950 SP2Q02086 613 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 EXOSC9Q06265 439 aaKnown RBP4.58□□□□□ -1.68
VPS13A-213ENST00000539950 LLGL1Q15334 1064 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 EZH2Q15910 746 aaKnown RBP4.58□□□□□ -1.68
VPS13A-213ENST00000539950 SRSF7Q16629 238 aaKnown RBP eCLIP4.58□□□□□ -1.68
VPS13A-213ENST00000539950 KIAA1614Q5VZ46 1190 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 SUMO4Q6EEV6 95 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 MAVSQ7Z434 540 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 VGLL2Q8N8G2 317 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 ATRIPQ8WXE1 791 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 SLC46A1Q96NT5 459 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 LMBRD1Q9NUN5 540 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 FLRT1Q9NZU1 646 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 SPEF1Q9Y4P9 236 aa4.58□□□□□ -1.68
VPS13A-213ENST00000539950 FNDC1Q4ZHG4 1894 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-213ENST00000539950 ZNF213O14771 459 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 DNAJB5O75953 348 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 NXPH3O95157 252 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 ERBB2P04626 1255 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 NHLRC4P0CG21 123 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-213ENST00000539950 NDUFB7P17568 137 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 HDCP19113 662 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 LIPAP38571 399 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 SLC10A2Q12908 348 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-213ENST00000539950 GRM1Q13255 1194 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 PGS1Q32NB8 556 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 TMEM240Q5SV17 173 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 FAM160B1Q5W0V3 765 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 ZNF66Q6ZN08 573 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms