RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 ACLYP53396 1101 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 TNNC1P63316 161 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 NFX1Q12986 1120 aaKnown RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 TRADDQ15628 312 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 NAA35Q5VZE5 725 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 SESTD1Q86VW0 696 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 SPATS2Q86XZ4 545 aaKnown RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 NT5DC4Q86YG4 428 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 USP38Q8NB14 1042 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 C1orf131Q8NDD1 294 aaKnown RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 C18orf25Q96B23 403 aaPredicted RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 ZSWIM1Q9BR11 485 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 BCO2Q9BYV7 579 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 SMYD3Q9H7B4 428 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 ITGA11Q9UKX5 1188 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 CYP1A1P04798 512 aaPredicted RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 ATICP31939 592 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 RBP5P82980 135 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 ITGA7Q13683 1181 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 ZBTB6Q15916 424 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 C2CD6Q53TS8 623 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 TWF2Q6IBS0 349 aaKnown RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 RHOT2Q8IXI1 618 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 SMG8Q8ND04 991 aaKnown RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 ATP6V1G3Q96LB4 118 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 SENP6Q9GZR1 1112 aaPredicted RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 TRMT13Q9NUP7 481 aaKnown RBP18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 TUBGCP4Q9UGJ1 667 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 PARP2Q9UGN5 583 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 ST3GAL5Q9UNP4 418 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 IPPQ9Y573 584 aa18.13■□□□□ 0.49
PCDHB17P-201ENST00000539533 KIAA0754O94854 1291 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 BRD2P25440 801 aaKnown RBP18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 THPOP40225 353 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 PEX26Q7Z412 305 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 ZNF653Q96CK0 615 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 VRTNQ9H8Y1 702 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 TMEM59LQ9UK28 342 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 HMGB1P1B2RPK0 211 aaPredicted RBP18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 PPEF2O14830 753 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 HSPA9P38646 679 aaKnown RBP18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 ORC1Q13415 861 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 LHX8Q68G74 356 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 PHLDB2Q86SQ0 1253 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 NT5DC3Q86UY8 548 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 KLHL7Q8IXQ5 586 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 ARRDC4Q8NCT1 418 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 CNTN3Q9P232 1028 aa18.12■□□□□ 0.49
PCDHB17P-201ENST00000539533 CYP1A2P05177 515 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 PSEN1P49768 467 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 MGAT3Q09327 533 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 RPS6KA1Q15418 735 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 OTUD6BQ8N6M0 293 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 TFAP2BQ92481 460 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 PLAAQ9Y263 795 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 STXBP5LQ9Y2K9 1186 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 DERAQ9Y315 318 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 SMIM28A0A1B0GU29 152 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 CES2O00748 559 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 KIF4AO95239 1232 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 NOMO3P69849 1222 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 CENPCQ03188 943 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 TCEAL1Q15170 157 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 MAATS1Q7Z4T9 603 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 MCOLN2Q8IZK6 566 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 SYCE1Q8N0S2 351 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 TWNKQ96RR1 684 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 NUP85Q9BW27 656 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 AGO3Q9H9G7 860 aaKnown RBP18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 HMX1Q9NP08 348 aaPredicted RBP18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 CNOT8Q9UFF9 292 aaKnown RBP18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 HMGXB4Q9UGU5 601 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 GTF3C4Q9UKN8 822 aa18.11■□□□□ 0.49
PCDHB17P-201ENST00000539533 KCNK3O14649 394 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 GRK4P32298 578 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 MDH1P40925 334 aaKnown RBP18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 NSFP46459 744 aaKnown RBP18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 CEP85LQ5SZL2 805 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 LLGL2Q6P1M3 1020 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 RPAINQ86UA6 219 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 CNPY4Q8N129 248 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 ZNF473Q8WTR7 871 aaKnown RBP18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 PTCH2Q9Y6C5 1203 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 CAPN7Q9Y6W3 813 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 RALGAPA2Q2PPJ7 1873 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 RAD23BP54727 409 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 HADHBP55084 474 aaKnown RBP18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 YWHAEP62258 255 aaKnown RBP18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 MICALCLQ6ZW33 695 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 EIF1ADQ8N9N8 165 aaKnown RBP18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 SLAIN1Q8ND83 568 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 BTBD6Q96KE9 485 aa18.1■□□□□ 0.49
PCDHB17P-201ENST00000539533 SCN1AP35498 2009 aa18.09■□□□□ 0.49
PCDHB17P-201ENST00000539533 MEIS3P2A8K0S8 358 aa18.09■□□□□ 0.49
PCDHB17P-201ENST00000539533 RRM1P23921 792 aa18.09■□□□□ 0.49
PCDHB17P-201ENST00000539533 HLTFQ14527 1009 aaKnown RBP eCLIP18.09■□□□□ 0.49
PCDHB17P-201ENST00000539533 TRIM72Q6ZMU5 477 aa18.09■□□□□ 0.49
PCDHB17P-201ENST00000539533 BEST2Q8NFU1 509 aa18.09■□□□□ 0.49
PCDHB17P-201ENST00000539533 ZNF564Q8TBZ8 553 aaPredicted RBP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms